{"id":"W2051525197","doi":"10.1016/j.gene.2009.06.020","title":"Endogenous retroviral LTRs as promoters for human genes: A critical assessment","year":2009,"lang":"en","type":"review","venue":"Gene","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":318,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of British Columbia; BC Cancer Agency","funders":"BC Cancer Agency; Canadian Institutes of Health Research","keywords":"Biology; Exaptation; Endogenous retrovirus; Long terminal repeat; Promoter; Gene; Genetics; Regulation of gene expression; Regulatory sequence; Transposable element; Gene expression; Function (biology); Genome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001820423,0.0003477211,0.0008020989,0.00001914879,0.000435494,0.0001143601,0.0003982025,0.0002937224,0.0004023206],"category_scores_gemma":[0.00004951747,0.0001333286,0.0006084416,0.0002193244,0.00004916373,0.00003328551,0.00007096067,0.0001678668,0.00006696617],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000999769,"about_ca_system_score_gemma":0.00008821113,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005784425,"about_ca_topic_score_gemma":0.00006119257,"domain_scores_codex":[0.9981426,0.0001136636,0.000476273,0.000568332,0.0002356328,0.0004634895],"domain_scores_gemma":[0.9992929,0.0002046171,0.0001397541,0.0001236237,0.00007268293,0.0001664167],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000001314019,0.0001375874,0.000002023352,0.00038276,0.00004005729,0.000009755332,0.00000794154,1.284894e-7,0.006230964,0.001202238,0.00008433431,0.9919009],"study_design_scores_gemma":[0.00009709116,0.001142063,0.00006303912,0.0004414436,0.0003981811,0.0001181254,0.0000105168,0.000002028481,0.00007460183,0.003579744,0.9936658,0.0004073616],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0006645994,0.9953267,0.00002028839,0.0003817175,0.0002687925,0.001492818,0.0005033229,0.00008619927,0.001255555],"genre_scores_gemma":[0.001464154,0.9920748,0.001857031,0.0001767696,0.001784235,0.0004529883,0.001658211,0.000005262315,0.0005265179],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9935815,"threshold_uncertainty_score":0.5436984,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1073557764000626,"score_gpt":0.358798363997557,"score_spread":0.2514425875974944,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}