{"id":"W2051789838","doi":"10.4161/mge.1.2.16733","title":"Potential origins and horizontal transfer of type III secretion systems and effectors","year":2011,"lang":"en","type":"article","venue":"Mobile Genetic Elements","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Effector; Type three secretion system; Virulence; Secretion; Horizontal gene transfer; Biology; Locus (genetics); Pathogenicity island; Gene; Genetics; Cytoplasm; Salmonella; Bacteria; Computational biology; Cell biology; Genome","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000686664,0.0002937504,0.0003208958,0.00056243,0.0006289543,0.001517743,0.0007387411,0.001772531,0.002005897],"category_scores_gemma":[0.001135944,0.0002745939,0.000317072,0.0005359013,0.0009862323,0.001340638,0.001923858,0.001000343,0.0009594182],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008097532,"about_ca_system_score_gemma":0.0006388918,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007846607,"about_ca_topic_score_gemma":0.0006549525,"domain_scores_codex":[0.9994448,0.00006768516,0.00002280472,0.0001044898,0.0001158042,0.0002444152],"domain_scores_gemma":[0.9993667,0.0002045017,0.0001304092,0.000107188,0.0000803713,0.0001107431],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.001009549,0.0005725168,0.1733853,0.0007209862,0.00009422455,0.005730872,0.003495571,0.002197701,0.5961736,0.09712771,0.0008023008,0.1186896],"study_design_scores_gemma":[0.0003968193,0.00289269,0.2662071,0.0008630461,0.0003013023,0.02056924,0.02142008,0.01528778,0.4769588,0.1182727,0.07652915,0.0003012184],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9770004,0.003882668,0.00797036,0.0008320773,0.00004832914,0.00004951049,0.00009991032,0.00005046659,0.01006628],"genre_scores_gemma":[0.994347,0.001172304,0.002085533,0.0001530905,0.00002972632,0.00002268674,0.0001118872,0.00001371147,0.002064017],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002005897,"threshold_uncertainty_score":0.00671041,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009315093810676429,"score_gpt":0.2425318865381718,"score_spread":0.2332167927274953,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}