{"id":"W2051789838","doi":"10.4161/mge.1.2.16733","title":"Potential origins and horizontal transfer of type III secretion systems and effectors","year":2011,"lang":"en","type":"article","venue":"Mobile Genetic Elements","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":39,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Effector; Type three secretion system; Virulence; Secretion; Horizontal gene transfer; Biology; Locus (genetics); Pathogenicity island; Gene; Genetics; Cytoplasm; Salmonella; Bacteria; Computational biology; Cell biology; Genome","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001000327,0.0001106082,0.0001351959,0.00003191379,0.00004719547,0.00001028147,0.00006320378,0.00006362904,0.00002199459],"category_scores_gemma":[0.000007109765,0.00009916548,0.00002340797,0.00003916925,0.00009356066,0.000002718353,0.00008587464,0.00003375444,0.000001323361],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00000928504,"about_ca_system_score_gemma":0.00002020991,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001456578,"about_ca_topic_score_gemma":0.00001964011,"domain_scores_codex":[0.9992517,0.00005437239,0.0001726324,0.0002283623,0.0001130897,0.0001798022],"domain_scores_gemma":[0.9997085,0.000002978156,0.00002724643,0.000138293,0.00005878813,0.00006418397],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001552447,0.00004336113,0.03004292,0.00008457275,0.0001250506,0.000002904919,0.0001316665,0.000002896667,0.9672425,0.00001157639,0.00005112319,0.002106194],"study_design_scores_gemma":[0.003885048,0.007913996,0.2821806,0.00006703953,0.0001551988,0.00003946476,0.0004989082,0.0002598302,0.6977387,0.00002086101,0.006764356,0.0004759717],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971145,0.001709081,0.0004172118,0.000001423842,0.0001639038,0.0004737687,0.00002350137,0.000004688239,0.00009185343],"genre_scores_gemma":[0.9984463,0.001129988,0.0001835526,0.000003966647,0.00006490924,0.00006422924,0.0000352325,0.00001289354,0.00005889801],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2695038,"threshold_uncertainty_score":0.4043851,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009315093810676429,"score_gpt":0.2425318865381718,"score_spread":0.2332167927274953,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}