{"id":"W2051850493","doi":"10.4161/21592543.2014.969584","title":"Assembly and characterization of novel<i>Alu</i>inserts detected from next-generation sequencing data","year":2014,"lang":"en","type":"article","venue":"Mobile Genetic Elements","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Alu element; Subfamily; Genome; Human genome; Sequence (biology); Biology; DNA sequencing; Sequence assembly; Computational biology; Genetics; DNA; Gene; Transcriptome","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004556003,0.0002593196,0.0003204125,0.001023557,0.000341074,0.0006313499,0.000243154,0.0004001178,0.0006106435],"category_scores_gemma":[0.00216872,0.0002180195,0.0003420641,0.0009189952,0.0002009078,0.0003136419,0.0002605563,0.0005344065,0.0006245932],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002468915,"about_ca_system_score_gemma":0.0002981551,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001383726,"about_ca_topic_score_gemma":0.002808813,"domain_scores_codex":[0.9997051,0.00004115477,0.00002570139,0.00009614307,0.00009683579,0.0000348681],"domain_scores_gemma":[0.9990215,0.0003067247,0.0002484804,0.0001413028,0.0001830548,0.00009897393],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001715121,0.000044686,0.01916423,0.00008643395,0.00003382463,0.000204654,0.0002306011,0.0007348403,0.9703188,0.0002010551,0.00007765243,0.008731689],"study_design_scores_gemma":[0.00001942607,0.0002499857,0.3030609,0.00003958777,0.0001637606,0.001845981,0.0002748943,0.0231864,0.6621706,0.0003716936,0.008579753,0.00003707644],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9702098,0.0004277048,0.02623733,0.00004050642,0.0000127599,0.00005589486,0.002160266,0.0002035429,0.0006521624],"genre_scores_gemma":[0.9044384,0.0004622783,0.08386685,0.00006952845,0.00001963037,0.00009923179,0.009487819,0.000188348,0.001367907],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001383726,"threshold_uncertainty_score":0.00275135,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04616914196338535,"score_gpt":0.251809648620585,"score_spread":0.2056405066571996,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}