{"id":"W2051850493","doi":"10.4161/21592543.2014.969584","title":"Assembly and characterization of novel<i>Alu</i>inserts detected from next-generation sequencing data","year":2014,"lang":"en","type":"article","venue":"Mobile Genetic Elements","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"SickKids Foundation; Hospital for Sick Children; University of Toronto","funders":"","keywords":"Alu element; Subfamily; Genome; Human genome; Sequence (biology); Biology; DNA sequencing; Sequence assembly; Computational biology; Genetics; DNA; Gene; Transcriptome","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001549445,0.0001511153,0.0001558002,0.00002925227,0.00007771597,0.00002967696,0.0002234938,0.00008096614,0.000008403385],"category_scores_gemma":[0.0000330653,0.000155427,0.00002201579,0.0000506367,0.00003681284,0.000002876753,0.0003114819,0.00003171506,0.000001256045],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009373412,"about_ca_system_score_gemma":0.00003705572,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008222643,"about_ca_topic_score_gemma":0.000113641,"domain_scores_codex":[0.9988709,0.00005090439,0.0003280981,0.0004556885,0.0001213037,0.0001730908],"domain_scores_gemma":[0.9991076,0.000009966887,0.0001693746,0.0005812745,0.00008073867,0.00005105014],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001011321,0.00003152837,0.009528383,0.000009899743,0.00006036851,1.292191e-7,0.00005127153,0.00005967177,0.9740396,0.000001660463,0.00003287897,0.01617455],"study_design_scores_gemma":[0.0008367625,0.0003411007,0.07642031,0.00001387474,0.00005928289,0.000002305989,0.00003506387,0.017475,0.8984463,0.0000130872,0.006128862,0.000228054],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.991711,0.0004513529,0.007123423,0.00001151374,0.0001620432,0.000292514,0.0002147242,0.000003653448,0.00002980913],"genre_scores_gemma":[0.9907234,0.0004799031,0.006908883,0.0001123237,0.0003062421,0.00004048897,0.001375296,0.00002192305,0.00003153575],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07559326,"threshold_uncertainty_score":0.633813,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04616914196338535,"score_gpt":0.251809648620585,"score_spread":0.2056405066571996,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}