{"id":"W2051947381","doi":"10.1016/j.meegid.2012.01.011","title":"Molecular methods for pathogen and microbial community detection and characterization: Current and potential application in diagnostic microbiology","year":2012,"lang":"en","type":"review","venue":"Infection Genetics and Evolution","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":157,"is_retracted":false,"has_abstract":false,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"","keywords":"Biology; Clinical microbiology; Computational biology; Molecular diagnostics; DNA microarray; Polymerase chain reaction; Restriction fragment length polymorphism; Virulence; DNA sequencing; Typing; Human pathogen; Identification (biology); Microbiology; Genetics; Gene; Ecology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002167853,0.001903617,0.002337349,0.002810979,0.0003040551,0.001499801,0.002236885,0.002003462,0.002861974],"category_scores_gemma":[0.001858221,0.0005579944,0.0006024646,0.00325056,0.001372806,0.002471708,0.0009354023,0.002649527,0.00354022],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008292327,"about_ca_system_score_gemma":0.001567261,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001127593,"about_ca_topic_score_gemma":0.00153,"domain_scores_codex":[0.9992779,0.0000978732,0.00006267135,0.0001580629,0.0003452033,0.00005830258],"domain_scores_gemma":[0.998265,0.0008677546,0.0001805982,0.00006575789,0.0005074656,0.0001134763],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00008789912,0.0001235082,0.0002882926,0.008264763,0.00005764185,0.0001130731,0.00003312449,0.0002972767,0.009754794,0.002608184,0.02002862,0.9583429],"study_design_scores_gemma":[0.0000235519,0.000156663,0.00149366,0.001602816,0.0001596285,0.001701537,0.00009239857,0.000381448,0.008659068,0.003307966,0.9823386,0.00008265053],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0001858511,0.9959692,0.002167676,0.0003610935,0.0003865575,0.000009731362,0.00003865802,0.00002714106,0.0008540849],"genre_scores_gemma":[0.001036392,0.9938969,0.003212877,0.0003521486,0.000338582,0.00001720471,0.00007722528,0.00000706831,0.001061603],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.002861974,"threshold_uncertainty_score":0.01146483,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02798176449223353,"score_gpt":0.3304095299521213,"score_spread":0.3024277654598877,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}