{"id":"W2052165000","doi":"10.1002/humu.20463","title":"Patterns of variation in DNA segments upstream of transcription start sites","year":2007,"lang":"en","type":"article","venue":"Human Mutation","topic":"Genetic Mapping and Diversity in Plants and Animals","field":"Biochemistry, Genetics and Molecular Biology","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University and Génome Québec Innovation Centre; Université de Montréal; Centre Hospitalier Universitaire Sainte-Justine","funders":"Canadian Institutes of Health Research; Genome Canada; Burroughs Wellcome Fund","keywords":"Biology; Haplotype; Genetics; Coalescent theory; Nucleotide diversity; Evolutionary biology; Population; Fixation (population genetics); Fixation index; Genetic variation; Single-nucleotide polymorphism; Allele; Gene; Genetic structure; Phylogenetics; Genotype; Demography","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001602909,0.00004203574,0.00005819921,0.000053746,0.00001789327,0.000002784911,0.00003388559,0.00004637335,0.00002728346],"category_scores_gemma":[0.000007216512,0.00004415505,0.00002435911,0.00002875755,0.000008415783,0.000002427081,0.000006242881,0.00001589923,8.626473e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000004253317,"about_ca_system_score_gemma":0.000006237167,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001100528,"about_ca_topic_score_gemma":0.0001661172,"domain_scores_codex":[0.9996072,0.00001584228,0.000156055,0.0000864368,0.00007100313,0.00006344782],"domain_scores_gemma":[0.9998115,0.00000383521,0.00007774181,0.00005550778,0.00003830916,0.00001311956],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003038362,0.00006402688,0.06788746,0.00003410453,0.00000875989,6.589498e-7,0.0006453346,0.00008144144,0.930566,0.00006595217,0.00001790391,0.000598038],"study_design_scores_gemma":[0.0004410336,0.0001870085,0.5076994,0.00002199081,0.000009789786,8.274333e-7,0.0004397179,0.00001874179,0.490955,0.0001272558,0.0000499958,0.00004925028],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9961079,0.00002146945,0.003438796,0.000005564803,0.00002213884,0.00005953838,0.00003069596,0.000002044362,0.0003118887],"genre_scores_gemma":[0.9994131,0.00001037758,0.0001757707,0.00001215627,0.00002084595,5.948327e-7,0.0002569299,0.000002377331,0.0001078636],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.439812,"threshold_uncertainty_score":0.1800591,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01913451019259214,"score_gpt":0.2524660750688323,"score_spread":0.2333315648762402,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}