{"id":"W2052184658","doi":"10.1073/pnas.0610699104","title":"Pattern pluralism and the Tree of Life hypothesis","year":2007,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":542,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"","keywords":"Hierarchy; Tree of life (biology); Common descent; Construct (python library); Tree (set theory); Pluralism (philosophy); Evolutionary biology; Taxon; Biology; Natural selection; Computer science; Phylogenetics; Ecology; Epistemology; Phylogenetic tree; Mathematics; Artificial intelligence; Selection (genetic algorithm); Combinatorics; Genetics; Gene; Philosophy","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009732771,0.00004730638,0.00008809654,0.00002743216,0.00007663723,0.000004491648,0.000309534,0.00003934921,9.886859e-7],"category_scores_gemma":[0.0003490471,0.00002485585,0.00004636177,0.0001026624,0.0009968225,0.000001601241,0.0001292372,0.00003103769,5.943151e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000001778244,"about_ca_system_score_gemma":0.00001063732,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000007920327,"about_ca_topic_score_gemma":4.05107e-7,"domain_scores_codex":[0.9993892,0.000003221369,0.0001771798,0.0001051176,0.0002536397,0.0000715904],"domain_scores_gemma":[0.9995871,0.00007012898,0.0002101817,0.000006469184,0.0001115045,0.00001462458],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003595245,0.00001103554,0.02605373,0.00001699166,0.00003200514,5.31313e-10,0.000168742,0.000006723223,0.9664875,0.00452903,0.0002302407,0.002428],"study_design_scores_gemma":[0.0002940464,0.00003618977,0.3645236,0.00001050055,0.00001054037,0.000001703429,0.0002391539,0.00002511303,0.625716,0.008754696,0.0003464689,0.00004196536],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9947361,0.0007884752,0.000001431582,0.001928784,0.000008516395,0.00007090148,0.000006624627,3.450662e-7,0.002458784],"genre_scores_gemma":[0.9990607,0.000187945,0.000302677,0.0003415753,0.00005735039,0.000001883514,2.685699e-8,0.000001681633,0.00004619018],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3407716,"threshold_uncertainty_score":0.3672834,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02994274608874656,"score_gpt":0.2642089417388463,"score_spread":0.2342661956500998,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}