{"id":"W2052212080","doi":"10.1073/pnas.0508502103","title":"The partitioned <i>Rhizobium etli</i> genome: Genetic and metabolic redundancy in seven interacting replicons","year":2006,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":375,"is_retracted":false,"has_abstract":true,"ca_institutions":"Wilfrid Laurier University","funders":"","keywords":"Biology; Plasmid; Synteny; Genetics; Genome; Replicon; Gene; Horizontal gene transfer","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001052232,0.00007997105,0.0001174369,0.00002731696,0.0003954517,0.00006460372,0.0005278678,0.00005197087,0.000008122245],"category_scores_gemma":[0.0003441212,0.00002722445,0.00005353296,0.0007585062,0.0005044977,0.0002573761,0.0001377073,0.0001300272,9.867069e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000163726,"about_ca_system_score_gemma":0.000008009941,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009645848,"about_ca_topic_score_gemma":0.000007569154,"domain_scores_codex":[0.9987444,0.00001543129,0.0003391949,0.0002276129,0.0004931745,0.0001802232],"domain_scores_gemma":[0.9991991,0.0003183472,0.0003386544,0.000004985796,0.0001176028,0.00002134369],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000006286855,0.00002442041,0.04094268,0.000005469419,0.000004855751,5.577322e-9,0.00006933647,0.000003918717,0.9504958,0.00756346,0.0001567186,0.0007270596],"study_design_scores_gemma":[0.0000616923,0.00002120691,0.7860948,0.00003185916,0.00000709178,0.000009802349,0.0002128399,0.00005995057,0.1846896,0.0280308,0.0007126566,0.00006765826],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.989444,0.0005620514,1.407308e-8,0.008076241,0.00001497485,0.0001438519,0.00001074343,0.000009654883,0.001738446],"genre_scores_gemma":[0.9993488,0.00003834385,0.00022596,0.0001765968,0.0001046643,0.00001534966,2.155609e-7,6.235903e-7,0.00008943558],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7658061,"threshold_uncertainty_score":0.3041535,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02009692175840224,"score_gpt":0.2480192072666081,"score_spread":0.2279222855082059,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}