{"id":"W2052346114","doi":"10.1371/journal.pone.0079252","title":"Comparison of Mutation Patterns in Full-Genome A/H3N2 Influenza Sequences Obtained Directly from Clinical Samples and the Same Samples after a Single MDCK Passage","year":2013,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":62,"is_retracted":false,"has_abstract":true,"ca_institutions":"Alberta Hospital Edmonton; University of Alberta Hospital; University of Alberta","funders":"National Medical Research Council; Medical Research Council","keywords":"Neuraminidase; Missense mutation; Mutation; Biology; Virology; Virus; Hemagglutinin (influenza); Influenza A virus; Genome; Molecular biology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002233995,0.0002475855,0.0003754692,0.001107511,0.0002213336,0.0004360005,0.0001923314,0.0003444947,0.0007461242],"category_scores_gemma":[0.001068567,0.0001537074,0.0003275799,0.0008720568,0.0001989483,0.0001828573,0.0002011044,0.0002522827,0.0002735328],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000196268,"about_ca_system_score_gemma":0.0001581126,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001619153,"about_ca_topic_score_gemma":0.002081376,"domain_scores_codex":[0.9996619,0.00003994334,0.00005734396,0.00009558225,0.00009730214,0.00004789098],"domain_scores_gemma":[0.9990722,0.0002608869,0.0002418339,0.00006856908,0.0002677207,0.00008867188],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008360239,0.00009684054,0.09072363,0.0002581873,0.0001359264,0.0008271098,0.000549414,0.0002340563,0.8986301,0.0000597668,0.0001291066,0.007519726],"study_design_scores_gemma":[0.00001836507,0.0007474094,0.8492541,0.00004024409,0.0002387272,0.006690595,0.0006519282,0.001292307,0.1396352,0.00003947842,0.001366242,0.00002535398],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9982419,0.0004397991,0.0002712312,0.000008949507,0.00000579562,0.00001701729,0.0007659341,0.000007371619,0.0002419456],"genre_scores_gemma":[0.9931317,0.00048135,0.002061219,0.00003767489,0.00001140706,0.00003133978,0.003915731,0.00001346793,0.0003161841],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001619153,"threshold_uncertainty_score":0.003219485,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.2650565610140406,"score_gpt":0.396329719485225,"score_spread":0.1312731584711844,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}