{"id":"W2052439644","doi":"10.1007/s00122-004-1618-8","title":"Activation of a rice endogenous retrotransposon Tos17 in tissue culture is accompanied by cytosine demethylation and causes heritable alteration in methylation pattern of flanking genomic regions","year":2004,"lang":"en","type":"article","venue":"Theoretical and Applied Genetics","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":90,"is_retracted":false,"has_abstract":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"National Natural Science Foundation of China; Weizmann Institute of Science; Iowa State University","keywords":"Retrotransposon; Biology; DNA methylation; Methylation; Demethylation; Genetics; Plant biochemistry; Cytosine; Transposable element; Magnaporthe grisea; Oryza sativa; Gene; Genome; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002308179,0.000605716,0.0004181893,0.000396119,0.0002166756,0.0003961905,0.0004711908,0.0002234289,0.001671776],"category_scores_gemma":[0.0002307378,0.0003807861,0.0005146062,0.0003134724,0.0004168508,0.000167914,0.0005129999,0.0008787626,0.0006679059],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006167561,"about_ca_system_score_gemma":0.0004883315,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001882124,"about_ca_topic_score_gemma":0.004586789,"domain_scores_codex":[0.999781,0.00003212737,0.00002057741,0.000048099,0.00005820268,0.00006004703],"domain_scores_gemma":[0.9996632,0.00009352275,0.00007369647,0.00007511876,0.00002335176,0.00007113451],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005849256,0.000009197192,0.0001451358,0.00001118939,0.000003758052,0.00003333547,0.00001074974,0.00001721554,0.9993572,0.00004971201,0.00001161312,0.0002923869],"study_design_scores_gemma":[0.000007797651,0.00009434552,0.002336884,0.000002791681,0.00001298234,0.00009432473,0.00002735058,0.0002935576,0.9963915,0.00002456865,0.0007104563,0.000003469432],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9934694,0.0007864233,0.003288811,0.00006619118,0.00006283767,0.00004202924,0.0005220235,0.0001296707,0.001632608],"genre_scores_gemma":[0.9890738,0.0005011093,0.00269717,0.00003777047,0.00001694358,0.00005721208,0.001819217,0.0001044744,0.005692219],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001882124,"threshold_uncertainty_score":0.005592585,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01529308687822028,"score_gpt":0.2196566581601163,"score_spread":0.204363571281896,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}