{"id":"W2052439644","doi":"10.1007/s00122-004-1618-8","title":"Activation of a rice endogenous retrotransposon Tos17 in tissue culture is accompanied by cytosine demethylation and causes heritable alteration in methylation pattern of flanking genomic regions","year":2004,"lang":"en","type":"article","venue":"Theoretical and Applied Genetics","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":90,"is_retracted":false,"has_abstract":false,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"National Natural Science Foundation of China; Weizmann Institute of Science; Iowa State University","keywords":"Retrotransposon; Biology; DNA methylation; Methylation; Demethylation; Genetics; Plant biochemistry; Cytosine; Transposable element; Magnaporthe grisea; Oryza sativa; Gene; Genome; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001208104,0.0001084339,0.0001883055,0.00002287429,0.00005607123,0.00001606601,0.00005805438,0.0001075357,0.00002890588],"category_scores_gemma":[0.000009106483,0.00006029446,0.00001585339,0.0002351721,0.00009896281,0.00003647127,0.00002493475,0.00007877411,5.148189e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001959678,"about_ca_system_score_gemma":0.000006718277,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001913425,"about_ca_topic_score_gemma":0.0001557533,"domain_scores_codex":[0.9992107,0.00004030601,0.0002968682,0.0002042202,0.0001144543,0.0001334794],"domain_scores_gemma":[0.9997175,0.00007711955,0.00009392083,0.000043627,0.00003157238,0.00003628053],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003544161,0.00008068536,0.001956576,0.00002473611,0.000004900509,1.612019e-7,0.001659775,0.0002890056,0.9811174,0.006681384,7.258549e-7,0.008149222],"study_design_scores_gemma":[0.0005933353,0.000232039,0.07837036,0.00004725692,0.00002258729,0.000002781914,0.0002413308,0.000444214,0.8621607,0.05769867,0.00004491683,0.0001418191],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.997593,0.0003480046,0.001158458,0.0004039703,0.000008522079,0.0003015755,0.00004079996,0.000007426475,0.0001382745],"genre_scores_gemma":[0.9988836,0.0002951346,0.0006365725,0.00005215185,0.00003054538,0.00001293975,0.00008471561,0.000001728968,0.000002623008],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1189567,"threshold_uncertainty_score":0.2458737,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01529308687822028,"score_gpt":0.2196566581601163,"score_spread":0.204363571281896,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}