{"id":"W2053667914","doi":"10.1016/s1055-7903(02)00415-3","title":"Incomplete distance matrices, supertrees and bat phylogeny","year":2003,"lang":"en","type":"article","venue":"Molecular Phylogenetics and Evolution","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":false,"ca_institutions":"Université de Montréal","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Phylogenetics; Phylogenetic tree; Ultrametric space; Missing data; Supertree; Evolutionary biology; Distance matrices in phylogeny; Maximum likelihood; Statistics; Mathematics; Bioinformatics; Genetics; Discrete mathematics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001616011,0.0002613179,0.0002002616,0.000056876,0.0002065624,0.00004532303,0.0001059448,0.0001386367,0.000003559127],"category_scores_gemma":[0.00005344742,0.00026381,0.0000654544,0.0001082166,0.0001951421,0.000001209561,0.0001390375,0.00006991375,0.00000249645],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001617625,"about_ca_system_score_gemma":0.00003751475,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002413659,"about_ca_topic_score_gemma":0.0000483864,"domain_scores_codex":[0.9986762,0.00009276678,0.000224996,0.0005287189,0.0001327222,0.000344556],"domain_scores_gemma":[0.9993789,0.00001124608,0.00006897661,0.0003246812,0.0000813846,0.000134788],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00002161725,0.00003389763,0.04181477,0.00002776019,0.00007343779,0.000004166732,0.0000368719,0.0001106824,0.94993,0.006404081,0.0001154799,0.001427291],"study_design_scores_gemma":[0.003040744,0.00141632,0.4798122,0.00004939856,0.0002633744,0.0002865397,0.0003863859,0.0008712093,0.2965872,0.01661589,0.1986665,0.002004266],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.933987,0.05487351,0.009962806,0.00005485968,0.0001166699,0.0001976043,0.00003480049,0.000005332307,0.0007674773],"genre_scores_gemma":[0.9920619,0.004259615,0.003313515,0.0001535117,0.00005954333,0.00002417437,0.000020905,0.00003345226,0.00007337291],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6533428,"threshold_uncertainty_score":0.9999814,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00541888742184089,"score_gpt":0.1975593822016706,"score_spread":0.1921404947798297,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}