{"id":"W2053736979","doi":"10.1093/nar/gkq1160","title":"Regulatory modules function in a non-autonomous manner to control transcription of the mbp gene","year":2010,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University Health Centre; Royal Victoria Regional Health Centre; Royal Victoria Hospital","funders":"Multiple Sclerosis Society; Multiple Sclerosis Society of Canada; McGill University Health Centre; Genome Canada","keywords":"Biology; Enhancer; Genetics; Cis-regulatory module; Regulation of gene expression; Transcription factor; Regulatory sequence; Gene; Computational biology; Transcriptional regulation; Interactome; Reporter gene; Transgene; Promoter; Transcription (linguistics); Gene regulatory network; Transgenesis; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001731174,0.000401113,0.0001625116,0.000241743,0.0001316125,0.000323055,0.0002777321,0.0001950704,0.0008649873],"category_scores_gemma":[0.0002257131,0.0002137047,0.0002054576,0.0001089608,0.0002592789,0.0002535545,0.0003117488,0.0003338502,0.0005763294],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001991279,"about_ca_system_score_gemma":0.0001843265,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002030456,"about_ca_topic_score_gemma":0.0004576487,"domain_scores_codex":[0.9998491,0.00001606048,0.000006264677,0.00006414209,0.00003709881,0.000027346],"domain_scores_gemma":[0.9998604,0.00003250972,0.00005023419,0.00001765872,0.00001481446,0.00002442671],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001794003,0.00000698438,0.000425505,0.00001107574,0.000003660675,0.00002109005,0.00001000508,0.00009812657,0.9960724,0.0004157693,0.00001236094,0.002905083],"study_design_scores_gemma":[0.00001551645,0.0001867958,0.009217407,0.00001149144,0.00003171856,0.0003802181,0.00002896045,0.00437974,0.9811941,0.0005258857,0.00401819,0.00000997928],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9377218,0.001403873,0.05770591,0.00007020792,0.00003172463,0.00004662174,0.0002046868,0.0005442847,0.002270792],"genre_scores_gemma":[0.9859642,0.0004274157,0.01095834,0.0000286546,0.00001223414,0.00003289966,0.0002536691,0.00006053309,0.002262045],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008649873,"threshold_uncertainty_score":0.002893627,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009845978961524117,"score_gpt":0.2561852585562174,"score_spread":0.2463392795946933,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}