{"id":"W2053812068","doi":"10.1093/nar/gkl365","title":"Genome prediction of PhoB regulated promoters in Sinorhizobium meliloti and twelve proteobacteria","year":2006,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":120,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada; Ontario Genomics; Ontario Genomics Institute; Genome Canada","keywords":"Biology; Sinorhizobium meliloti; Genome; Promoter; Genetics; Proteobacteria; Microbiology; Computational biology; Gene; Symbiosis; Bacteria; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002063815,0.000317408,0.0002851591,0.0008717763,0.0002224414,0.0002959856,0.000129028,0.0002247223,0.0006591938],"category_scores_gemma":[0.0003946847,0.0002558381,0.0003421181,0.0004953888,0.0001112439,0.0001344067,0.000176607,0.0002483946,0.0004471771],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004062147,"about_ca_system_score_gemma":0.0005826917,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003181063,"about_ca_topic_score_gemma":0.006387343,"domain_scores_codex":[0.9999123,0.00001399363,0.00000595589,0.00002544156,0.00002003971,0.00002227185],"domain_scores_gemma":[0.9997626,0.00006230488,0.00005845878,0.000010202,0.00003909231,0.00006724363],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.002154884,0.0001572779,0.05599141,0.0004602033,0.00004499066,0.0005949161,0.0002683915,0.002818868,0.9130316,0.0003112499,0.0004792738,0.02368703],"study_design_scores_gemma":[0.0003610034,0.001064173,0.6545291,0.000192165,0.0002681473,0.00180687,0.0008165107,0.05232569,0.2725065,0.001382192,0.01467062,0.00007697944],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9896095,0.0007281527,0.005393436,0.00006907855,0.000007171851,0.00004929256,0.003368537,0.0002076286,0.0005672171],"genre_scores_gemma":[0.9627361,0.000544838,0.01808828,0.00004278316,0.00001009621,0.00008136187,0.01736319,0.00005314248,0.001080298],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003181063,"threshold_uncertainty_score":0.006325126,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02824391321404294,"score_gpt":0.251606104438919,"score_spread":0.2233621912248761,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}