{"id":"W2053907587","doi":"10.1139/gen-2012-0094","title":"Comparative genomics of Japanese<i>Erwinia pyrifoliae</i>strain Ejp617 with closely related erwinias","year":2012,"lang":"en","type":"article","venue":"Genome","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"Norgen Biotek Corporation (Canada)","funders":"Rural Development Administration","keywords":"Erwinia; Biology; Genome; Genetics; Comparative genomics; Whole genome sequencing; Genomics; Fire blight; Gene; Virulence; Plasmid","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007024677,0.0002320043,0.0002182881,0.0002463291,0.0001828658,0.0002233836,0.0001218148,0.0001547072,0.0004959421],"category_scores_gemma":[0.0001153008,0.00009324654,0.0003336485,0.0004058927,0.00007854417,0.0002058099,0.0001907162,0.0001988865,0.000172592],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002345689,"about_ca_system_score_gemma":0.0001516829,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003257357,"about_ca_topic_score_gemma":0.001840098,"domain_scores_codex":[0.9999206,0.000007452249,0.000007023758,0.00002691557,0.00002142339,0.00001651503],"domain_scores_gemma":[0.9999108,0.00001286953,0.0000290594,0.000005866861,0.00001481402,0.00002653064],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000144317,0.00002437233,0.002112795,0.00005265096,0.00001415384,0.00008839343,0.00007776019,0.00005723614,0.9952722,0.00004632282,0.00003748514,0.002072362],"study_design_scores_gemma":[0.00004101576,0.0007717879,0.726686,0.00002608555,0.000204287,0.002324126,0.0008014896,0.002219596,0.2568724,0.0001668776,0.009856934,0.00002939517],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9981222,0.0003573622,0.0003194066,0.00002900294,0.000003808692,0.000005905276,0.0006192408,0.00001161986,0.0005315416],"genre_scores_gemma":[0.9888996,0.0004485794,0.001690466,0.00005831603,0.000006316814,0.00001471719,0.007514051,0.00002202568,0.001345767],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003257357,"threshold_uncertainty_score":0.00647682,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03087568900466866,"score_gpt":0.2159600878967855,"score_spread":0.1850843988921169,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}