{"id":"W2054003354","doi":"10.1159/000324505","title":"Evolution of Patchily Distributed Proteins Shared between Eukaryotes and Prokaryotes: Dictyostelium as a Case Study","year":2011,"lang":"en","type":"article","venue":"Microbial Physiology","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Dalhousie University; Vetenskapsrådet; Joint Genome Institute","keywords":"Biology; Prokaryote; Phylogenetic tree; Evolutionary biology; Polyphyly; Horizontal gene transfer; Dictyostelium discoideum; Phylogenetics; Gene; Genome; Dictyostelium; Ecology; Genetics; Clade","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002397922,0.000165979,0.0002552767,0.0007363478,0.0005755037,0.0006213232,0.0001879529,0.0003211241,0.0002643349],"category_scores_gemma":[0.0004039721,0.0001155038,0.0002067755,0.0008343009,0.0006097805,0.0004926245,0.0005994679,0.0003055464,0.0001093435],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003362565,"about_ca_system_score_gemma":0.000133583,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008881713,"about_ca_topic_score_gemma":0.001326512,"domain_scores_codex":[0.9998654,0.00001905367,0.000008513009,0.00006310944,0.00002251593,0.00002139454],"domain_scores_gemma":[0.9996697,0.00008920759,0.0001277444,0.00004410587,0.00001956831,0.00004970831],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007583927,0.0000821345,0.3564008,0.0002258515,0.0001758217,0.003258966,0.001769868,0.00149788,0.5912132,0.001796586,0.0001312886,0.04268928],"study_design_scores_gemma":[0.00002230867,0.0003327079,0.9542721,0.00002879878,0.0001082182,0.007554195,0.00127442,0.003555359,0.02774842,0.001073065,0.004001832,0.0000286123],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985908,0.0006957637,0.0004623374,0.0000219642,6.679617e-7,0.00000176841,0.00002216268,0.000002977547,0.0002015132],"genre_scores_gemma":[0.9978776,0.0005293605,0.001399899,0.00001260518,0.000002598854,0.000002761091,0.00006561763,0.000003630888,0.0001058526],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008881713,"threshold_uncertainty_score":0.002439737,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01712195099330805,"score_gpt":0.2233298501840427,"score_spread":0.2062078991907346,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}