{"id":"W2054606441","doi":"10.1073/pnas.1307862110","title":"Evolutionary genomics of epidemic and nonepidemic strains of <i>Pseudomonas aeruginosa</i>","year":2013,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":98,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ottawa Hospital; University of Ottawa; University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Pseudomonas aeruginosa; Biology; Virulence; Comparative genomics; Microbiology; Opportunistic pathogen; Genome; Whole genome sequencing; Adaptation (eye); Genomics; Cystic fibrosis; Human pathogen; Genetics; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002044008,0.0002288769,0.0002308947,0.0004782236,0.0002609481,0.0003773871,0.0001785612,0.0003067612,0.0004954481],"category_scores_gemma":[0.000522532,0.0001005741,0.0002540287,0.0005728509,0.0002126001,0.000144477,0.0004070852,0.000475236,0.0001429314],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003538506,"about_ca_system_score_gemma":0.0002139079,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002893036,"about_ca_topic_score_gemma":0.003196847,"domain_scores_codex":[0.999799,0.00004101311,0.00001452467,0.00006068251,0.00004045512,0.00004438755],"domain_scores_gemma":[0.9996209,0.00009541486,0.0001164906,0.00002445208,0.00006219709,0.00008048418],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007194626,0.0001766022,0.06438043,0.0001347266,0.00009190178,0.0003551147,0.001025831,0.0005163068,0.9213664,0.0003249905,0.0001842055,0.01072407],"study_design_scores_gemma":[0.00001242533,0.0003384521,0.9856763,0.00001686563,0.0000494545,0.0008972072,0.000526575,0.001180471,0.009522887,0.0001320853,0.00163447,0.00001290298],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989842,0.0001297128,0.0002024151,0.00002976035,0.000001761331,0.000005180923,0.0002994308,0.000004341466,0.0003432364],"genre_scores_gemma":[0.9965989,0.0002102131,0.0008687893,0.00008780847,0.000006461289,0.00001488991,0.001832999,0.00001554268,0.000364361],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002893036,"threshold_uncertainty_score":0.005752385,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02636461402062473,"score_gpt":0.268811113896698,"score_spread":0.2424464998760733,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}