{"id":"W2054615832","doi":"10.1093/femspd/ftv031","title":"Host gene expression for Mycobacterium avium subsp. paratuberculosis infection in human THP-1 macrophages","year":2015,"lang":"en","type":"article","venue":"Pathogens and Disease","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Research Institute for Veterinary Science, College of Veterinary Medicine, Seoul National University; Rural Development Administration","keywords":"Paratuberculosis; Mycobacterium avium subspecies paratuberculosis; Biology; Immune system; Microbiology; Mycobacterium; Gene; CXCL10; Chemokine; CCL5; Immunology; Virology; Genetics; Bacteria; T cell","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00020588,0.0001827706,0.0002959704,0.000350108,0.0002312618,0.0003250259,0.00006683554,0.0002407909,0.001223521],"category_scores_gemma":[0.0001588431,0.0001126425,0.0002784899,0.0003790422,0.0001467651,0.00009502946,0.0001260527,0.0002786676,0.0003948445],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001341866,"about_ca_system_score_gemma":0.0001941728,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000427595,"about_ca_topic_score_gemma":0.0007493154,"domain_scores_codex":[0.999782,0.00003451491,0.00001331478,0.00005663942,0.00005260673,0.0000608792],"domain_scores_gemma":[0.9999126,0.0000275753,0.00001788635,0.00000889463,0.00001968021,0.00001337502],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004854493,0.00005547916,0.005047817,0.0001358353,0.00001609211,0.0001266738,0.0001649971,0.0001711607,0.9915448,0.0000435143,0.00009299983,0.002115152],"study_design_scores_gemma":[0.00007366962,0.001527691,0.2507102,0.00006756863,0.0001683096,0.001380303,0.001162396,0.004833553,0.7348636,0.0002602322,0.00491719,0.00003527333],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9937931,0.0013557,0.001540997,0.00006048031,0.00002108062,0.00002838654,0.002404234,0.00002440444,0.0007714167],"genre_scores_gemma":[0.9914345,0.001102102,0.003525337,0.00009480897,0.00001375097,0.0001264346,0.002292443,0.000009301515,0.001401328],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001223521,"threshold_uncertainty_score":0.004093111,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03430783654464337,"score_gpt":0.3157865638093571,"score_spread":0.2814787272647137,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}