{"id":"W2054615832","doi":"10.1093/femspd/ftv031","title":"Host gene expression for Mycobacterium avium subsp. paratuberculosis infection in human THP-1 macrophages","year":2015,"lang":"en","type":"article","venue":"Pathogens and Disease","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Research Institute for Veterinary Science, College of Veterinary Medicine, Seoul National University; Rural Development Administration","keywords":"Paratuberculosis; Mycobacterium avium subspecies paratuberculosis; Biology; Immune system; Microbiology; Mycobacterium; Gene; CXCL10; Chemokine; CCL5; Immunology; Virology; Genetics; Bacteria; T cell","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002515645,0.0001867725,0.0002630849,0.0001655667,0.0001083295,0.0000661609,0.0000442924,0.00008436124,0.00007144585],"category_scores_gemma":[0.0004450516,0.0001551673,0.0001072166,0.0001570677,0.00005306951,0.0001775729,0.00006894809,0.00009972288,0.00001567398],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006519567,"about_ca_system_score_gemma":0.000139729,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001669702,"about_ca_topic_score_gemma":0.00003028879,"domain_scores_codex":[0.9986944,0.00007461719,0.0002268016,0.0003819837,0.0002362029,0.0003859593],"domain_scores_gemma":[0.9981079,0.00005598961,0.00004824205,0.0002827158,0.0001531643,0.001351995],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0007405845,0.0003724094,0.7000747,0.0002802046,0.00001227916,0.0001431176,0.0000978253,0.000001454431,0.295247,0.00003143656,0.002641498,0.0003575331],"study_design_scores_gemma":[0.003018264,0.0004185075,0.9618782,0.0001258138,0.0001194692,0.00001144421,0.00003954525,0.0001019455,0.0312373,0.0003406216,0.002487749,0.0002210711],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9964176,0.001550851,0.0001252394,0.0004293844,0.0001260518,0.0007238321,0.0003654161,0.00004852308,0.0002130879],"genre_scores_gemma":[0.9975159,0.0006393337,0.0003243417,0.0002746482,0.0003109884,0.0003750999,0.0003750005,0.00002837758,0.0001562961],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2640097,"threshold_uncertainty_score":0.632754,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03430783654464337,"score_gpt":0.3157865638093571,"score_spread":0.2814787272647137,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}