{"id":"W2054875735","doi":"10.1371/journal.pgen.1000733","title":"Mu Transposon Insertion Sites and Meiotic Recombination Events Co-Localize with Epigenetic Marks for Open Chromatin across the Maize Genome","year":2009,"lang":"en","type":"article","venue":"PLoS Genetics","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":221,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Cooperative State Research, Education, and Extension Service; University of Haifa; Joint Genome Institute; U.S. Department of Energy; McGill University; U.S. Department of Agriculture","keywords":"Biology; Transposable element; Transposase; Genetics; Centromere; Ectopic recombination; Chromatin; Non-allelic homologous recombination; Genome; Recombination; Homologous recombination; Inverted repeat; Chromosome; Gene; Genetic recombination","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001559572,0.0001458951,0.0002101747,0.0005753872,0.0001712344,0.000347247,0.0002072014,0.0001946045,0.0009391346],"category_scores_gemma":[0.0004037295,0.0002493333,0.0002243008,0.0005048436,0.0002293217,0.0001904887,0.0003269126,0.000236987,0.000233171],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002843937,"about_ca_system_score_gemma":0.0001577342,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00112134,"about_ca_topic_score_gemma":0.002132349,"domain_scores_codex":[0.9997136,0.00001644001,0.00001561182,0.0001175901,0.00009829049,0.00003845523],"domain_scores_gemma":[0.999633,0.000057611,0.0001842619,0.00003844193,0.00003995551,0.00004680272],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001884823,0.00001584592,0.01553431,0.00005711342,0.000031816,0.00008354436,0.00009811484,0.0001721976,0.9773142,0.0004101421,0.00005167065,0.006042583],"study_design_scores_gemma":[0.00002305635,0.0001459313,0.8231857,0.0000160465,0.00006496302,0.0008202739,0.0001110216,0.001909776,0.1695171,0.0005897731,0.003593741,0.00002257601],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9926,0.0007154045,0.004841914,0.0000237741,0.000005516318,0.00001255431,0.0003769221,0.00005885672,0.001365191],"genre_scores_gemma":[0.9962693,0.0001360513,0.002168508,0.00001986158,0.000006149,0.0000125302,0.0004179059,0.00001721961,0.0009523981],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00112134,"threshold_uncertainty_score":0.003141701,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03129475232269868,"score_gpt":0.2624651327673989,"score_spread":0.2311703804447002,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}