{"id":"W2054875735","doi":"10.1371/journal.pgen.1000733","title":"Mu Transposon Insertion Sites and Meiotic Recombination Events Co-Localize with Epigenetic Marks for Open Chromatin across the Maize Genome","year":2009,"lang":"en","type":"article","venue":"PLoS Genetics","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":221,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Cooperative State Research, Education, and Extension Service; University of Haifa; Joint Genome Institute; U.S. Department of Energy; McGill University; U.S. Department of Agriculture","keywords":"Biology; Transposable element; Transposase; Genetics; Centromere; Ectopic recombination; Chromatin; Non-allelic homologous recombination; Genome; Recombination; Homologous recombination; Inverted repeat; Chromosome; Gene; Genetic recombination","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00018599,0.0001588028,0.0001663967,0.000006602188,0.0005556124,0.0001446665,0.0003395356,0.00008752952,0.00008671231],"category_scores_gemma":[0.00002291763,0.00006083442,0.00004341497,0.0001809571,0.00005139001,0.00006241204,0.00003679625,0.00006571824,0.000007007636],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002282455,"about_ca_system_score_gemma":0.00001164095,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000134716,"about_ca_topic_score_gemma":0.0005763753,"domain_scores_codex":[0.9989355,0.00008128591,0.0002290378,0.0003008224,0.0001810915,0.0002722219],"domain_scores_gemma":[0.9994984,0.0001460717,0.00009814199,0.00009203777,0.0000842269,0.00008107608],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001987053,0.0006261019,0.02619605,0.00003993824,0.0000922524,0.000001569466,0.001255481,0.0003600269,0.9238144,0.0001724956,0.00004995304,0.04719308],"study_design_scores_gemma":[0.0008336335,0.001794972,0.9535202,0.00003819825,0.0000954468,0.00001043871,0.0002061938,0.00486424,0.03066522,0.006456269,0.001228557,0.0002866563],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9942086,0.0003782006,0.00007349558,0.003878554,0.00002564282,0.001191568,0.0001270974,0.00002535841,0.0000914362],"genre_scores_gemma":[0.998109,0.0001645575,0.0008612959,0.0003455851,0.00009195451,0.00007145466,0.0002252329,0.000002452597,0.0001284439],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9273241,"threshold_uncertainty_score":0.4273378,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03129475232269868,"score_gpt":0.2624651327673989,"score_spread":0.2311703804447002,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}