{"id":"W2054929185","doi":"10.1099/ijs.0.048371-0","title":"Molecular signatures for the class Coriobacteriia and its different clades; proposal for division of the class Coriobacteriia into the emended order Coriobacteriales , containing the emended family Coriobacteriaceae and Atopobiaceae fam. nov., and Eggerthellales ord. nov., containing the family Eggerthellaceae fam. nov.","year":2013,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":98,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Phylogenetic tree; Clade; Phylum; Phylogenetics; Evolutionary biology; Genetics; Genome; 16S ribosomal RNA; Bacterial genome size; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008306358,0.0004101566,0.0006429541,0.00005913396,0.0006693697,0.0001747332,0.0006953326,0.0002191101,0.000004745455],"category_scores_gemma":[0.000299991,0.0001794797,0.0001964838,0.00006519316,0.000754119,0.00001750864,0.0005562706,0.0002365946,5.433042e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004959512,"about_ca_system_score_gemma":0.0001910933,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000500042,"about_ca_topic_score_gemma":0.00007501452,"domain_scores_codex":[0.9976516,0.0004390279,0.001003059,0.0003769585,0.0001934099,0.000335937],"domain_scores_gemma":[0.9965807,0.000907992,0.001098056,0.0003128865,0.001035098,0.00006523654],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007792137,0.00004805648,0.003239372,0.0004307381,0.001334858,9.597866e-7,0.001499924,0.0000387507,0.9897406,0.002127786,0.0003540741,0.0004057407],"study_design_scores_gemma":[0.02500998,0.01196748,0.7345535,0.007225282,0.004045842,0.0036613,0.0736864,0.008485828,0.05830879,0.01162725,0.05804332,0.003384992],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9702588,0.0212054,0.0008408355,0.003975254,0.001307889,0.002206625,0.000190395,0.000003447294,0.00001132873],"genre_scores_gemma":[0.9961053,0.002429597,0.0001958847,0.0006832003,0.0002814521,0.0001747408,0.00004115443,0.00003096654,0.00005768992],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9314317,"threshold_uncertainty_score":0.7318969,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01226040599988162,"score_gpt":0.238312595904382,"score_spread":0.2260521899045004,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}