{"id":"W2055863762","doi":"10.1186/1471-2164-15-857","title":"Six newly sequenced chloroplast genomes from prasinophyte green algae provide insights into the relationships among prasinophyte lineages and the diversity of streamlined genome architecture in picoplanktonic species","year":2014,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":91,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Genome; Clade; Phylogenomics; Evolutionary biology; Genetics; Gene; Phylogenetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004035337,0.0002766317,0.000347505,0.00006244346,0.0005387142,0.00004240686,0.0004701793,0.0001608221,0.000002226848],"category_scores_gemma":[0.0002105883,0.0001819967,0.0001060602,0.0001190479,0.000753512,0.000003985569,0.0007704161,0.0002739932,0.00000176841],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003386499,"about_ca_system_score_gemma":0.0001323829,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001813122,"about_ca_topic_score_gemma":0.02513747,"domain_scores_codex":[0.9984,0.0003541886,0.0003960537,0.0004585683,0.000139871,0.0002512843],"domain_scores_gemma":[0.9986247,0.0003585757,0.0002885327,0.0005750238,0.00008843641,0.00006477187],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0008754994,0.00006360294,0.5923125,0.00007734535,0.0003137173,0.000002174073,0.01909922,0.01084713,0.3737823,0.0006596678,0.00002125219,0.00194558],"study_design_scores_gemma":[0.002232889,0.0001912509,0.9717146,0.00001703609,0.0001104313,0.00000332528,0.001289245,0.0006783178,0.01317525,0.003235219,0.007018918,0.000333499],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9923631,0.005580422,0.0007351096,0.0003594625,0.0001063964,0.0006110889,0.00005512593,0.000005262274,0.000184044],"genre_scores_gemma":[0.9954904,0.001252869,0.002490835,0.0001152728,0.0003367831,0.00002546378,0.00007450539,0.00002426511,0.0001896524],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3794022,"threshold_uncertainty_score":0.9926512,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01438406839175485,"score_gpt":0.1972389284666334,"score_spread":0.1828548600748785,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}