{"id":"W2055992143","doi":"10.1046/j.1365-313x.2001.00945.x","title":"Survey of transposable elements from rice genomic sequences","year":2001,"lang":"en","type":"article","venue":"The Plant Journal","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":171,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"","keywords":"Transposable element; Biology; Genome; Transposase; Oryza sativa; Genetics; Retrotransposon; Insertion sequence; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003376706,0.00005114987,0.00008149299,0.000003640871,0.0002008703,0.00002945605,0.0002452941,0.00002179726,0.001164483],"category_scores_gemma":[0.0000132963,0.00001428683,0.0000362926,0.0001162504,0.00002319431,0.00003413891,0.00001237928,0.00007976413,0.00002195499],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007686059,"about_ca_system_score_gemma":0.00001084297,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001838903,"about_ca_topic_score_gemma":0.005727383,"domain_scores_codex":[0.9993892,0.0001100965,0.0001858312,0.00006336796,0.0001285938,0.0001228972],"domain_scores_gemma":[0.9995769,0.0002197701,0.0001017182,0.00002406726,0.00003444198,0.00004313471],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00006578271,0.00007261927,0.5896174,7.426391e-7,0.00005708681,0.00001025025,0.0002540985,0.00007515262,0.4015197,0.00002527667,0.0003455812,0.007956329],"study_design_scores_gemma":[0.00009006626,0.00006845959,0.9948124,0.000007803061,0.00001395239,0.00006460505,0.0000804693,0.0002365414,0.000982444,0.001107231,0.002486836,0.00004919324],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979838,0.0002832582,0.000004536929,0.0006814192,0.0001012924,0.00003930297,0.0005750186,0.000004479209,0.0003268857],"genre_scores_gemma":[0.9991555,0.0004110557,0.00004719185,0.00006070581,0.0001614092,6.572073e-7,0.00008381938,2.505834e-7,0.00007946591],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4051951,"threshold_uncertainty_score":0.9997486,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05252219453837017,"score_gpt":0.2238062188676258,"score_spread":0.1712840243292556,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}