{"id":"W2056298000","doi":"10.1139/g10-038","title":"The history and disposition of transposable elements in polyploid<i>Gossypium</i>","year":2010,"lang":"en","type":"article","venue":"Genome","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":46,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Science Foundation","keywords":"Retrotransposon; Biology; Genome; Transposable element; Gossypium; Polyploid; Long terminal repeat; Genetics; Gossypium hirsutum; Evolutionary biology; Gene; Botany","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000924142,0.00003481469,0.0000434133,0.000003429251,0.00006564203,0.000006074849,0.00007014156,0.00002546007,0.000263517],"category_scores_gemma":[0.000005534037,0.00001187266,0.00001648917,0.00005418662,0.00004250119,0.000023605,0.00001116961,0.00004897497,0.000003636869],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001037243,"about_ca_system_score_gemma":0.000004683574,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001115706,"about_ca_topic_score_gemma":0.004146289,"domain_scores_codex":[0.9996716,0.00001240042,0.0001011496,0.00007453564,0.00005236421,0.00008799177],"domain_scores_gemma":[0.9998691,0.00004343143,0.00002717395,0.00002569434,0.00001104323,0.00002352785],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000005863288,0.00002293175,0.01225597,0.00000124883,0.000001686205,1.331976e-7,0.0001269089,4.624477e-7,0.9833564,0.0005602588,0.000009522821,0.003658585],"study_design_scores_gemma":[0.00007963718,0.00006326239,0.9064298,0.000002392169,0.000003734058,0.000001546057,0.00005237158,0.00001953514,0.00116644,0.0008252868,0.09130739,0.00004863318],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9979305,0.0003482566,3.22856e-7,0.0006434745,0.0001119546,0.00007160235,0.00001979411,0.000004821043,0.0008692326],"genre_scores_gemma":[0.9993539,0.00005796291,0.00004120552,0.00003396986,0.00004993393,0.000006591903,0.00001118644,2.35598e-7,0.0004450252],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.98219,"threshold_uncertainty_score":0.2885327,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008005287047086626,"score_gpt":0.1787847999588613,"score_spread":0.1707795129117747,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}