{"id":"W2056415048","doi":"10.1186/1471-2164-13-673","title":"A catalogue of putative unique transcripts from Douglas-fir (Pseudotsuga menziesii) based on 454 transcriptome sequencing of genetically diverse, drought stressed seedlings","year":2012,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Deutsche Forschungsgemeinschaft; Colorado State University","keywords":"Biology; Transcriptome; Douglas fir; DNA microarray; Pyrosequencing; DNA sequencing; Genetics; Botany; Gene; Computational biology; Evolutionary biology; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0001561349,0.0002472098,0.000315046,0.00008409115,0.00007513177,0.00001154466,0.0002925836,0.0002787934,0.0000448216],"category_scores_gemma":[0.00003399497,0.0002582608,0.0001952683,0.0001197041,0.0001665577,0.000009692965,0.00004688721,0.0001195546,0.000004021975],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004583159,"about_ca_system_score_gemma":0.0002117375,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003547918,"about_ca_topic_score_gemma":0.000124887,"domain_scores_codex":[0.9986468,0.0001253798,0.0003820219,0.00032232,0.0002200296,0.0003034347],"domain_scores_gemma":[0.9990859,0.00004318891,0.0002086603,0.0003749887,0.0001409483,0.0001462816],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004137636,0.00009251733,0.01776081,0.00008410785,0.0001064001,0.000001068462,0.002473884,0.01198584,0.9666761,0.0001690302,0.00008561209,0.0001509151],"study_design_scores_gemma":[0.001693171,0.0003066739,0.04177552,0.00002960584,0.0001728553,0.0000022916,0.001408471,0.0008421842,0.9510896,0.0001816265,0.002140898,0.0003570631],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9804913,0.0002702167,0.01646724,0.00003405876,0.0002802069,0.0002784173,0.001857231,0.00001011158,0.0003112197],"genre_scores_gemma":[0.9823324,0.00004330141,0.01583155,0.0001822702,0.0001364525,0.000005588704,0.00139429,0.00002608677,0.00004807044],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02401472,"threshold_uncertainty_score":0.9999869,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02757659645051835,"score_gpt":0.2388456714189837,"score_spread":0.2112690749684654,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}