{"id":"W2056575484","doi":"10.1016/j.gene.2009.04.006","title":"Substitutional editing of Heterocapsa triquetra chloroplast transcripts and a folding model for its divergent chloroplast 16S rRNA","year":2009,"lang":"en","type":"article","venue":"Gene","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Ribosomal RNA; Dinoflagellate; Chloroplast; RNA editing; Genetics; Ribosome; Gene; RNA; Botany","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001017798,0.0001275823,0.0001446642,0.0000356079,0.0001389263,0.00001157714,0.0001132224,0.0001141775,0.000006217083],"category_scores_gemma":[0.00002653237,0.0001361652,0.00009993257,0.00003937224,0.00004429475,0.000008130812,0.00003536662,0.00004870339,9.10236e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001109312,"about_ca_system_score_gemma":0.00003889387,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000002821896,"about_ca_topic_score_gemma":0.00001193209,"domain_scores_codex":[0.9992466,0.00001142662,0.0001632441,0.0002612903,0.0001056332,0.000211782],"domain_scores_gemma":[0.9996617,0.000005801544,0.00006656253,0.0001036299,0.00008036325,0.00008194137],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002206727,0.00006001191,0.001245608,0.00003900857,0.0000449123,0.000001786936,0.0001247677,0.001600976,0.9951608,0.0003443487,0.0002490791,0.0009080843],"study_design_scores_gemma":[0.00130071,0.0003371829,0.004522576,0.00002057575,0.00003842621,0.00001961025,0.0000219411,0.007230925,0.9854912,0.0001787862,0.0006476091,0.0001904263],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.952545,0.000983528,0.04558141,0.00008444193,0.0001421508,0.0002294639,0.0003349377,0.000007691521,0.00009135307],"genre_scores_gemma":[0.9975262,0.0001804949,0.001642713,0.0001446599,0.0002362469,0.000009808894,0.0001488235,0.000006945137,0.0001041636],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04498112,"threshold_uncertainty_score":0.5552654,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02220801641784467,"score_gpt":0.2348647924922634,"score_spread":0.2126567760744187,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}