{"id":"W2056636137","doi":"10.1099/vir.0.064980-0","title":"Full-length genomes of 16 hepatitis C virus genotype 1 isolates representing subtypes 1c, 1d, 1e, 1g, 1h, 1i, 1j and 1k, and two new subtypes 1m and 1n, and four unclassified variants reveal ancestral relationships among subtypes","year":2014,"lang":"en","type":"article","venue":"Journal of General Virology","topic":"Hepatitis C virus research","field":"Medicine","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institut National de Santé Publique du Québec","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Biology; Phylogenetic tree; GenBank; Genome; NS5B; Phylogenetics; Genetics; Genotype; Hepatitis C virus; Virology; Virus; Hepacivirus; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.001484661,0.000293378,0.0009034453,0.0004249369,0.0002508809,0.00007509278,0.0001414984,0.0002982278,0.00007057229],"category_scores_gemma":[0.001131055,0.0002497197,0.00007865596,0.0002116727,0.000565708,0.0003789749,0.0001798399,0.0007871283,0.000002713944],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005243419,"about_ca_system_score_gemma":0.0001964588,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003044192,"about_ca_topic_score_gemma":0.006317454,"domain_scores_codex":[0.9971493,0.0006202472,0.0009110928,0.0004562708,0.0003519309,0.0005110849],"domain_scores_gemma":[0.9977619,0.0005918527,0.0005732139,0.0002764775,0.0002932094,0.0005033136],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0009605289,0.00004902508,0.9118616,0.0001045631,0.0002425237,0.000092994,0.0004056355,0.00002385859,0.0749121,0.000345963,0.000539394,0.01046184],"study_design_scores_gemma":[0.00309436,0.001661655,0.9863167,0.00009959715,0.0002373237,0.0008299955,0.00004306692,0.003024639,0.00131809,0.002126926,0.001023362,0.0002243198],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9906396,0.006722597,0.0003173499,0.001419718,0.0001747916,0.0002523567,0.00001499709,0.00001607654,0.0004425062],"genre_scores_gemma":[0.9836062,0.01049186,0.004381241,0.0001563957,0.0006771429,0.00000322457,0.000007639546,0.00004260884,0.0006336818],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07445508,"threshold_uncertainty_score":0.9999955,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04811047743619323,"score_gpt":0.296611365430048,"score_spread":0.2485008879938548,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}