{"id":"W2056636137","doi":"10.1099/vir.0.064980-0","title":"Full-length genomes of 16 hepatitis C virus genotype 1 isolates representing subtypes 1c, 1d, 1e, 1g, 1h, 1i, 1j and 1k, and two new subtypes 1m and 1n, and four unclassified variants reveal ancestral relationships among subtypes","year":2014,"lang":"en","type":"article","venue":"Journal of General Virology","topic":"Hepatitis C virus research","field":"Medicine","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institut National de Santé Publique du Québec","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Biology; Phylogenetic tree; GenBank; Genome; NS5B; Phylogenetics; Genetics; Genotype; Hepatitis C virus; Virology; Virus; Hepacivirus; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001907722,0.0001884225,0.000193594,0.000322813,0.0002512455,0.0002754915,0.0001694995,0.0002709543,0.0007725632],"category_scores_gemma":[0.000689699,0.0001795884,0.0002667206,0.0006596602,0.0002203568,0.0002745821,0.0002029293,0.000272281,0.0002104374],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002678,"about_ca_system_score_gemma":0.0003604431,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004508346,"about_ca_topic_score_gemma":0.007113028,"domain_scores_codex":[0.9997645,0.00002711411,0.00002858696,0.00005307096,0.00006393111,0.00006277307],"domain_scores_gemma":[0.9997244,0.00009211262,0.00004395115,0.00004256631,0.00006493751,0.00003187966],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001255686,0.0002245694,0.1287815,0.0001781925,0.00006847209,0.0004749951,0.0009562998,0.0008295648,0.8470422,0.0001995568,0.0002306149,0.01975833],"study_design_scores_gemma":[0.00008759793,0.0009330637,0.9237429,0.0000396232,0.0001183213,0.00207005,0.0006194627,0.002618792,0.06418191,0.0001799214,0.00537223,0.00003616939],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983972,0.0001556784,0.0002055643,0.00001120456,0.000002416308,0.00001064886,0.001033973,0.000002671171,0.000180615],"genre_scores_gemma":[0.982768,0.0003510939,0.002975683,0.00007513436,0.000008127668,0.00002693803,0.01323199,0.000007934327,0.0005550316],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004508346,"threshold_uncertainty_score":0.008964181,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04811047743619323,"score_gpt":0.296611365430048,"score_spread":0.2485008879938548,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}