{"id":"W2056694244","doi":"10.1139/o11-046","title":"Genomic relationship between SINE retrotransposons, Pol III–Pol II transcription, and chromatin organization: the journey from junk to jewel","year":2011,"lang":"en","type":"review","venue":"Biochemistry and Cell Biology","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute of Dental and Craniofacial Research; Buck Institute for Research on Aging","keywords":"Retrotransposon; Biology; Genome; Transposable element; Interspersed repeat; Genetics; Chromatin; RNA polymerase III; Mobile genetic elements; RNA; Sine; DNA; Human genome; Gene; RNA polymerase","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001282585,0.0003092217,0.0005369081,0.00001281189,0.0006214024,0.00004571256,0.0003088475,0.0005572711,0.0006211028],"category_scores_gemma":[0.00004922636,0.0001234676,0.0001046926,0.0003178292,0.0001280079,0.00002337588,0.00009258233,0.000252477,0.00002287016],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002053738,"about_ca_system_score_gemma":0.00004176641,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001469075,"about_ca_topic_score_gemma":0.00004119253,"domain_scores_codex":[0.9986344,0.0001307076,0.0004509362,0.0004995184,0.00005404015,0.000230388],"domain_scores_gemma":[0.9992067,0.0002513911,0.0001941647,0.0001266814,0.00005364725,0.0001674244],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00002611883,0.0002002114,0.01609813,0.00139711,0.0002764456,0.000003256745,0.001102049,1.670452e-7,0.4768714,0.0006003332,0.001571373,0.5018534],"study_design_scores_gemma":[0.0002165746,0.0001964551,0.02127864,0.0004346968,0.0005964073,0.00002479648,0.0001001031,3.391773e-7,0.003728149,0.0005758416,0.9723185,0.0005295518],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.2430886,0.7541151,0.000008362126,0.0008779867,0.00009501282,0.0004177856,0.001068905,0.00003739475,0.0002908244],"genre_scores_gemma":[0.4221231,0.5732265,0.00009640772,0.00009379038,0.0009202822,0.00003280391,0.002794743,0.000004536771,0.0007078542],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.9707471,"threshold_uncertainty_score":0.680064,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04423440595913097,"score_gpt":0.2410324750909912,"score_spread":0.1967980691318603,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}