{"id":"W2056898550","doi":"10.1073/pnas.2134464100","title":"An endogenous retroviral long terminal repeat is the dominant promoter for human β1,3-galactosyltransferase 5 in the colon","year":2003,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":124,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; BC Cancer Agency","funders":"","keywords":"Promoter; Long terminal repeat; Biology; Endogenous retrovirus; Gene; Endogeny; Transcription factor; Molecular biology; Gene expression; Regulation of gene expression; Retrovirus; Genetics; Genome","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002373568,0.00008123773,0.00008433127,0.00006200786,0.0003281136,0.00004017913,0.0007787884,0.00008298163,0.00001040355],"category_scores_gemma":[0.0003521928,0.0000402921,0.00007629077,0.0002705049,0.0005201152,0.00002542986,0.00003193652,0.0001348088,3.151392e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001319699,"about_ca_system_score_gemma":0.00004912189,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001156157,"about_ca_topic_score_gemma":0.0000020781,"domain_scores_codex":[0.9987062,0.00003320491,0.0002263759,0.00023662,0.0006182122,0.0001794306],"domain_scores_gemma":[0.9996115,0.00003724694,0.0001239356,0.00002475022,0.0001805236,0.00002202449],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000449343,0.00007013511,0.005463995,0.0000264028,0.000005433639,2.69766e-8,0.0003677523,0.000005783038,0.9881682,0.005505102,0.0001265469,0.0002156239],"study_design_scores_gemma":[0.0003282386,0.0003544426,0.01352771,0.00001718603,0.000005895571,0.00003358116,0.0003171229,0.00008016255,0.9796249,0.004837892,0.0008119664,0.00006090441],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9954777,0.00006575751,0.000006551469,0.00171277,0.000007496675,0.0006366836,0.00001494502,0.000001321346,0.002076826],"genre_scores_gemma":[0.9991852,0.0000134459,0.0001697932,0.0003930604,0.0000528554,0.00006084416,9.195096e-7,0.000003925978,0.0001199657],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008543361,"threshold_uncertainty_score":0.2523618,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05426910364309549,"score_gpt":0.3448326892958025,"score_spread":0.290563585652707,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}