{"id":"W2056914618","doi":"10.1016/j.bpj.2012.11.1539","title":"Atomistic Simulations Explain Mutational Effects on Ion Modulation and Kainate Receptor Activity","year":2013,"lang":"en","type":"article","venue":"Biophysical Journal","topic":"Neuroscience and Neuropharmacology Research","field":"Neuroscience","cited_by":0,"is_retracted":false,"has_abstract":false,"ca_institutions":"McGill University","funders":"","keywords":"Kainate receptor; Chemistry; Biophysics; Ionotropic effect; Dimer; Ion channel; Mutant; Glutamate receptor; Molecular dynamics; Transmembrane domain; Receptor; Biochemistry; Computational chemistry; Biology; AMPA receptor","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002002478,0.0004440162,0.0007060297,0.0003616504,0.000772909,0.0005258981,0.001099267,0.001346716,0.005422472],"category_scores_gemma":[0.001288489,0.0003145681,0.0004938123,0.0002753558,0.0007523864,0.0006319778,0.0005925546,0.0008883939,0.0004412132],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009617432,"about_ca_system_score_gemma":0.0008022873,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008463211,"about_ca_topic_score_gemma":0.004849253,"domain_scores_codex":[0.9998809,0.00002196752,0.000003926813,0.00001278449,0.00003085443,0.00004956674],"domain_scores_gemma":[0.9996812,0.0001511416,0.00002598688,0.00003021919,0.00004254024,0.00006888651],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0002424182,0.0001109712,0.001872948,0.00008100487,0.0000471421,0.0006112114,0.0001501042,0.9522587,0.01392936,0.02673399,0.001654851,0.002307299],"study_design_scores_gemma":[0.00007322839,0.00003619279,0.0006231009,0.000005452409,0.00001431848,0.00003033992,0.00004113903,0.9908502,0.001033433,0.006890592,0.0003895328,0.00001241226],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9635627,0.0001764081,0.01070524,0.001200881,0.000124054,0.00003451603,0.0004685246,0.0002750794,0.02345262],"genre_scores_gemma":[0.997113,0.00009348561,0.001512625,0.0001267878,0.00001508275,0.00003006298,0.000101336,0.00006802027,0.0009395807],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008463211,"threshold_uncertainty_score":0.01813996,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03712930899073284,"score_gpt":0.3339489838539534,"score_spread":0.2968196748632205,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}