{"id":"W2057058281","doi":"10.1093/nar/gkr189","title":"Activity of the human immunodeficiency virus type 1 cell cycle-dependent internal ribosomal entry site is modulated by IRES trans-acting factors","year":2011,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Viral Infections and Immunology Research","field":"Medicine","cited_by":72,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Cancer Center, University of Colorado; National Institutes of Health; Sidaction; McGill University; Styrelsen för Internationellt Utvecklingssamarbete; National Institute of General Medical Sciences; Comisión Nacional de Investigación Científica y Tecnológica; Centre National de la Recherche Scientifique; American Heart Association; Howard Hughes Medical Institute","keywords":"Internal ribosome entry site; Biology; Translation (biology); Ribosome; Footprinting; Eukaryotic translation; RNA; Cell biology; Eukaryotic Small Ribosomal Subunit; Protein biosynthesis; Virology; Genetics; Messenger RNA; DNA; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0007604465,0.0002006614,0.000327303,0.0002860083,0.0006336787,0.00004006624,0.0005330176,0.0002613602,0.002457666],"category_scores_gemma":[0.0001355082,0.0001397334,0.0001915648,0.0007382911,0.0007167236,0.0002061193,0.0003697596,0.001700639,0.000101632],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001942372,"about_ca_system_score_gemma":0.0001462415,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007055356,"about_ca_topic_score_gemma":0.00003450043,"domain_scores_codex":[0.9972049,0.000422778,0.0003418131,0.0004055548,0.000897184,0.0007277696],"domain_scores_gemma":[0.9985524,0.00009042206,0.00009766511,0.0007169831,0.0004199253,0.0001226162],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000374944,0.0008277732,0.1062488,0.00005136025,0.00009278931,0.000007721047,0.002440887,8.300087e-7,0.8872628,0.00001176185,0.0003045518,0.002375845],"study_design_scores_gemma":[0.00084885,0.0009975298,0.2483722,0.00006629374,0.00002359932,0.00001090545,0.00056294,0.0002495623,0.748235,0.00004246172,0.0004756392,0.0001149575],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.982263,0.0003366354,0.00003338351,0.0001267006,0.0001493362,0.0004434131,0.00004459349,0.00004679446,0.01655616],"genre_scores_gemma":[0.9960996,0.0001848704,0.00001726673,0.00001842055,0.00002788164,0.00001057547,0.000008038215,0.0000428921,0.003590435],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1421234,"threshold_uncertainty_score":0.9995567,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07333493599497126,"score_gpt":0.3506705903332209,"score_spread":0.2773356543382496,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}