{"id":"W2057381259","doi":"10.1371/journal.pone.0054673","title":"Brain Microbial Populations in HIV/AIDS: α-Proteobacteria Predominate Independent of Host Immune Status","year":2013,"lang":"en","type":"article","venue":"PLoS ONE","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":150,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University; BC Cancer Agency; Health Canada; University of Alberta","funders":"Canadian Institutes of Health Research; Health Canada; Alberta Innovates","keywords":"Biology; Proteobacteria; Human brain; Immune system; White matter; Microbiology; Ribosomal RNA; Virology; Bacteria; Immunology; 16S ribosomal RNA; Gene; Genetics; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001047012,0.0001682838,0.0001881475,0.0007338732,0.0003645612,0.0003867561,0.00008218519,0.0002031955,0.0008702186],"category_scores_gemma":[0.0002560167,0.0001508376,0.00008456844,0.000346952,0.0003214142,0.0002463761,0.0003375331,0.0001941687,0.000124622],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000108981,"about_ca_system_score_gemma":0.0001421052,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001171468,"about_ca_topic_score_gemma":0.001797693,"domain_scores_codex":[0.9999286,0.000009188929,0.000006486123,0.00001912127,0.00001347857,0.00002313326],"domain_scores_gemma":[0.9999039,0.00001044781,0.00002965038,0.000004466116,0.0000193507,0.00003222031],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001880658,0.0001080052,0.607378,0.0001642367,0.00008663227,0.001814369,0.001595514,0.00009850445,0.3707056,0.0001217352,0.0001424623,0.01590431],"study_design_scores_gemma":[0.00001077398,0.0003203713,0.9879926,0.00002372711,0.00003099655,0.002318895,0.001121956,0.0001830405,0.007421118,0.0001937966,0.0003753991,0.000007303263],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9993586,0.000360175,0.00003619094,0.000007736799,0.000001756709,0.00000409563,0.0000468121,0.000001344798,0.0001832548],"genre_scores_gemma":[0.9992266,0.0003391609,0.0001338276,0.00001828817,0.000005806058,0.000006498286,0.0001111777,0.000001039722,0.0001576057],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001171468,"threshold_uncertainty_score":0.00291121,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03261966896710058,"score_gpt":0.250411181478649,"score_spread":0.2177915125115484,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}