{"id":"W2057423523","doi":"10.1128/jb.00474-08","title":"Identification of a Putative Acetyltransferase Gene, MMP0350, Which Affects Proper Assembly of both Flagella and Pili in the Archaeon<i>Methanococcus maripaludis</i>","year":2008,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":40,"is_retracted":false,"has_abstract":true,"ca_institutions":"Queen's University","funders":"Japan Science and Technology Agency; Core Research for Evolutional Science and Technology; Natural Sciences and Engineering Research Council of Canada","keywords":"Methanococcus; Biology; Flagellum; Pilus; Gene; Genetics; Identification (biology); Computational biology; Archaea; Escherichia coli; Botany","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000649653,0.00009988906,0.0002667574,0.00008448545,0.00004018138,0.000003942895,0.0002224855,0.0001268325,0.000003906609],"category_scores_gemma":[0.0001218726,0.00007217408,0.00007757617,0.0001152878,0.0002597227,0.00001013457,0.00005219776,0.0001473681,3.913045e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007300522,"about_ca_system_score_gemma":0.0001142639,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002222184,"about_ca_topic_score_gemma":0.0000309496,"domain_scores_codex":[0.9988661,0.0004143801,0.0003543358,0.0001374527,0.0001005753,0.0001271866],"domain_scores_gemma":[0.9992739,0.00005629564,0.0003240428,0.0001484863,0.0001602364,0.00003704603],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003444167,0.00009273704,0.04228573,0.00004452172,0.00007175338,0.00001878226,0.001134767,0.00002609892,0.9556853,0.00001763965,0.00005105584,0.0002272285],"study_design_scores_gemma":[0.000742007,0.0009255957,0.3293997,0.00001370459,0.00003163864,0.0003627179,0.0001328235,0.00000773292,0.6680946,0.00007329422,0.000145768,0.00007036157],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9981826,0.0005497898,0.000706299,0.0001872474,0.00007434242,0.0002005316,0.00003710745,6.797492e-7,0.00006140818],"genre_scores_gemma":[0.998615,0.000921322,0.0002875684,0.00007712328,0.00005159417,0.000003693913,0.00001421214,0.000005549778,0.00002399839],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2875906,"threshold_uncertainty_score":0.2943173,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01329644546259399,"score_gpt":0.2398194665451629,"score_spread":0.2265230210825689,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}