{"id":"W2057589481","doi":"10.1093/nar/gkr921","title":"modMine: flexible access to modENCODE data","year":2011,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Genetics, Aging, and Longevity in Model Organisms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":136,"is_retracted":false,"has_abstract":true,"ca_institutions":"Ontario Institute for Cancer Research","funders":"National Human Genome Research Institute; National Institutes of Health; Wellcome Trust","keywords":"Metadata; Biology; Encyclopedia; Exploit; Model organism; Data sharing; Caenorhabditis elegans; Genome; Drosophila melanogaster; Download; Organism; Genomics; Computational biology; Computer science; Data science; World Wide Web; Genetics; Library science; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001037945,0.0001876776,0.0001718634,0.0001717555,0.0002263722,0.0001402116,0.003141803,0.0002090837,0.0004190496],"category_scores_gemma":[0.000283717,0.0001852082,0.00004649552,0.0003226835,0.000194039,0.00002396444,0.003587306,0.0003064256,0.0004154927],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002731966,"about_ca_system_score_gemma":0.0001921644,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002793796,"about_ca_topic_score_gemma":0.0001303262,"domain_scores_codex":[0.9974332,0.0001469771,0.0002296073,0.0008716307,0.0005853525,0.0007332583],"domain_scores_gemma":[0.9969453,0.00001491176,0.00003186089,0.002349513,0.0003167613,0.000341621],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0004816553,0.0005494239,0.01875204,0.00009791622,0.0001505352,0.0000349984,0.002353513,0.0003651986,0.7449218,0.0006171055,0.2181001,0.01357566],"study_design_scores_gemma":[0.001005697,0.001233182,0.02282219,0.00003845054,0.00003185847,0.00003347687,0.0004469986,0.005045631,0.7835006,0.002861921,0.1820873,0.0008927687],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9435881,0.0004028737,0.0280602,0.0006170695,0.0002359137,0.0005913742,0.0001021551,0.0000568454,0.02634547],"genre_scores_gemma":[0.9851331,0.0002442817,0.009799715,0.0004848625,0.0003815548,0.00003435521,0.0001507231,0.00006637308,0.003705062],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04154498,"threshold_uncertainty_score":0.7552571,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.244598332710469,"score_gpt":0.4094784503983188,"score_spread":0.1648801176878498,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}