{"id":"W2057613402","doi":"10.1371/journal.pgen.0020027","title":"An Evaluation of the Performance of Tag SNPs Derived from HapMap in a Caucasian Population","year":2006,"lang":"en","type":"article","venue":"PLoS Genetics","topic":"Genetic Associations and Epidemiology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":119,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University and Génome Québec Innovation Centre","funders":"Canadian Institutes of Health Research; Tartu Ülikool; Genome Canada; Burroughs Wellcome Fund","keywords":"International HapMap Project; Single-nucleotide polymorphism; Minor allele frequency; Biology; Genetics; Haplotype; Population; Allele frequency; SNP; Ancestry-informative marker; Selection (genetic algorithm); Genotype; Demography; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003051019,0.00007917178,0.0001356315,0.00002927422,0.00003018514,0.000002638453,0.0001415462,0.0001314544,0.00001225595],"category_scores_gemma":[0.00007273106,0.00006797005,0.00004194411,0.00008712541,0.00004207837,0.000002026203,0.00003529042,0.00004217782,6.474934e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002222187,"about_ca_system_score_gemma":0.00006449902,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003491134,"about_ca_topic_score_gemma":0.001433733,"domain_scores_codex":[0.9989788,0.0002255928,0.0003291906,0.0001658081,0.0001814505,0.0001191625],"domain_scores_gemma":[0.9992666,0.00001232445,0.0002177058,0.0003279407,0.0001589322,0.00001650948],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000006468155,0.00006393974,0.5928304,0.000004379999,0.000009482238,1.510677e-8,0.00003410072,0.01677281,0.3898484,0.000003426134,0.00001320893,0.0004134515],"study_design_scores_gemma":[0.0002561568,0.00007073997,0.6938794,0.000008222438,0.00003554838,2.269224e-7,0.00002842469,0.04642189,0.2590457,0.0001884089,0.0000137188,0.00005158203],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.999035,0.0004081993,0.00004978383,0.00004360733,0.00006020674,0.0002068257,0.00002699163,0.000001931277,0.0001674297],"genre_scores_gemma":[0.9983867,0.00003815513,0.001208879,0.00003225459,0.00008020851,0.00001480023,0.0002189126,0.00000950814,0.00001053417],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1308026,"threshold_uncertainty_score":0.2771738,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02176292653976361,"score_gpt":0.2701543571723412,"score_spread":0.2483914306325775,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}