{"id":"W2057707585","doi":"10.4236/ns.2010.210138","title":"Assessment of a short phylogenetic marker based on comparisons of 3’ end 16S rDNA and 5’ end 16S-23S ITS nucleotide sequences of the Bacillus cereus group","year":2010,"lang":"en","type":"article","venue":"Natural Science","topic":"Bacillus and Francisella bacterial research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université du Québec à Montréal; Agriculture and Agri-Food Canada","funders":"","keywords":"Biology; Cereus; Bacillus cereus; Phylogenetic tree; 16S ribosomal RNA; Bacillus licheniformis; Genetics; Bacillus anthracis; Microbiology; Bacillus (shape); Bacillus subtilis; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000701116,0.00012291,0.0001889237,0.00005387392,0.0001123145,0.00002080827,0.0005749344,0.00009572387,0.00007489385],"category_scores_gemma":[0.0001938027,0.00007925378,0.00007212927,0.0002822727,0.001377265,0.000008134781,0.0002190789,0.0002130581,3.761151e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001374062,"about_ca_system_score_gemma":0.0002976549,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007466549,"about_ca_topic_score_gemma":0.0001870588,"domain_scores_codex":[0.9985358,0.0000646042,0.0002325835,0.0003402478,0.0005613575,0.0002654445],"domain_scores_gemma":[0.9991375,0.00005245268,0.0001132469,0.0003817498,0.000223884,0.00009119679],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004222249,0.00005439126,0.01932515,0.00002646066,0.000006512641,3.763396e-7,0.00000950039,0.00002127936,0.9760509,0.0002112719,0.00002004533,0.004231924],"study_design_scores_gemma":[0.0001704183,0.000213338,0.4222081,0.00001649344,0.000006018469,0.000002180104,0.00001217257,0.002163985,0.574618,0.000009193763,0.0005067718,0.00007333242],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9968279,0.0002455589,0.00002917085,0.00008810405,0.0002859321,0.000213957,0.00006240139,0.000001905296,0.002245073],"genre_scores_gemma":[0.9988552,0.00004097879,0.0009749649,0.00003881109,0.00003519278,0.000004802329,0.000005543845,0.000005591974,0.0000388768],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.402883,"threshold_uncertainty_score":0.5074589,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01266837247185076,"score_gpt":0.2920346278990549,"score_spread":0.2793662554272041,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}