{"id":"W2057957357","doi":"10.1128/aac.48.8.2993-2998.2004","title":"Nucleotide and Amino Acid Polymorphisms at Drug Resistance Sites in Non-B-Subtype Variants of Human Immunodeficiency Virus Type 1","year":2004,"lang":"en","type":"article","venue":"Antimicrobial Agents and Chemotherapy","topic":"HIV/AIDS drug development and treatment","field":"Medicine","cited_by":40,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; Jewish General Hospital","funders":"Canadian Institutes of Health Research; Canadian Foundation for AIDS Research; American Physicians Fellowship for Medicine in Israel; amfAR, The Foundation for AIDS Research","keywords":"Biology; Virology; Reverse transcriptase; Genetics; Genotype; Virus; Mutation; Drug resistance; Amino acid substitution; Amino acid; Nucleotide; Silent mutation; Gene; Polymerase chain reaction; Missense mutation","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002809713,0.0001488547,0.0001624521,0.0004415668,0.0002123841,0.0003131689,0.0001467437,0.0003051641,0.0006267522],"category_scores_gemma":[0.0007950314,0.00009171308,0.0001630764,0.0003278521,0.0001353402,0.0001237153,0.00008354821,0.0002577979,0.0001138224],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001563439,"about_ca_system_score_gemma":0.0001145779,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00155086,"about_ca_topic_score_gemma":0.002192205,"domain_scores_codex":[0.9997373,0.00008278979,0.00003587098,0.00005924591,0.00005309797,0.0000316595],"domain_scores_gemma":[0.9995484,0.0001628367,0.0001340592,0.00003834765,0.00004304102,0.00007332523],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001691151,0.0003568699,0.7889667,0.0000686645,0.0001523066,0.001088396,0.0004904636,0.0004408293,0.1826416,0.0001412433,0.0001634806,0.02379832],"study_design_scores_gemma":[0.0001213809,0.001785306,0.9720113,0.00002384068,0.00008313258,0.005572179,0.0003389515,0.00117455,0.01723466,0.0001337025,0.001502484,0.00001843797],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9995705,0.0001988666,0.00007631632,0.000005067859,0.00000208513,0.000003258482,0.00004601561,9.724073e-7,0.00009688898],"genre_scores_gemma":[0.9991135,0.0001279645,0.0004265402,0.00002191989,0.00000630569,0.000004468637,0.0002035221,0.000002773325,0.000093028],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00155086,"threshold_uncertainty_score":0.003083646,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01044326265858343,"score_gpt":0.2461105614376177,"score_spread":0.2356672987790343,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}