{"id":"W2058235149","doi":"10.1186/1471-2164-14-481","title":"Genomic characterization provides new insight into Salmonella phage diversity","year":2013,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":78,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute of Food and Agriculture; Université Laval; U.S. Department of Agriculture","keywords":"Salmonella; Biology; Virulence; Lytic cycle; Bacteriophage; Lysogenic cycle; Comparative genomics; Microbiology; Genetics; Gene; Genome; Horizontal gene transfer; Genomics; Salmonella enterica; Bacteria; Virus; Escherichia coli","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001939672,0.0003239488,0.0002246555,0.001012449,0.0001607362,0.0004624603,0.0001549779,0.0003717448,0.001245455],"category_scores_gemma":[0.0005093619,0.0001563265,0.0002888074,0.0008777534,0.0002807592,0.0002947884,0.0002914626,0.0004442057,0.0004112069],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002398739,"about_ca_system_score_gemma":0.0002615464,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001321331,"about_ca_topic_score_gemma":0.001653971,"domain_scores_codex":[0.9998744,0.00001462157,0.000008095216,0.0000556742,0.00002754591,0.00001972995],"domain_scores_gemma":[0.9994649,0.0001714742,0.0001359025,0.00004198978,0.0001250973,0.00006054202],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001474529,0.00005349291,0.04366437,0.000243903,0.00003591741,0.0001651443,0.0002269769,0.0004675968,0.9435819,0.0003827444,0.0001643495,0.01086618],"study_design_scores_gemma":[0.00003556749,0.0007105735,0.7641886,0.0001308233,0.000202836,0.002591127,0.0008908655,0.004688868,0.2046975,0.001589902,0.0202302,0.00004311653],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9817234,0.00128283,0.0116333,0.0001659442,0.00001857359,0.0000313657,0.00309191,0.00008701086,0.001965502],"genre_scores_gemma":[0.9743873,0.0007975742,0.01642912,0.0001392411,0.00003654963,0.00003577203,0.007425801,0.00003888517,0.0007095558],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001321331,"threshold_uncertainty_score":0.004166484,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01480465296982685,"score_gpt":0.2020314777548755,"score_spread":0.1872268247850487,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}