{"id":"W2058438089","doi":"10.1371/journal.pbio.1001868","title":"Genome-Wide Stochastic Adaptive DNA Amplification at Direct and Inverted DNA Repeats in the Parasite Leishmania","year":2014,"lang":"en","type":"article","venue":"PLoS Biology","topic":"Research on Leishmaniasis Studies","field":"Medicine","cited_by":144,"is_retracted":false,"has_abstract":true,"ca_institutions":"Centre hospitalier universitaire de Québec","funders":"Institute of Infection and Immunity; Canadian Institutes of Health Research","keywords":"Biology; Extrachromosomal DNA; Genetics; Genome; Amplicon; Recombinase; Gene duplication; Repeated sequence; Inverted repeat; Gene; Polymerase chain reaction; Recombination","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006044199,0.0001710519,0.0004055958,0.0001570817,0.0001427547,0.00001289045,0.0001600474,0.0001116737,0.00002722636],"category_scores_gemma":[0.001752049,0.0001113562,0.00004050074,0.0002133532,0.0003463309,0.00004162275,0.0001350479,0.0002174443,0.00009689415],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001211055,"about_ca_system_score_gemma":0.00002739989,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009037039,"about_ca_topic_score_gemma":0.0004597368,"domain_scores_codex":[0.9982646,0.0004673596,0.0002632291,0.0004566913,0.0001692831,0.0003789146],"domain_scores_gemma":[0.998243,0.001038753,0.00009180624,0.0004362166,0.0001049101,0.00008535271],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001277237,0.0005184742,0.7138138,0.0001348399,0.0005381749,0.00004116972,0.005562473,0.000009241149,0.2698598,0.001844555,0.001330812,0.005069371],"study_design_scores_gemma":[0.0009645005,0.000764905,0.9932472,0.00004373215,0.00006644421,0.00002765997,0.0002377879,0.000813184,0.001222306,0.0007230587,0.00174778,0.0001414373],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9911725,0.0005565393,0.0002876238,0.00330635,0.00003271234,0.0007617544,0.000009366527,0.00004888869,0.003824291],"genre_scores_gemma":[0.9983182,0.0001959689,0.00008805939,0.0008242843,0.0001045068,0.0001679611,0.00005853541,0.00001738664,0.0002250774],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2794334,"threshold_uncertainty_score":0.4540972,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04672771500349352,"score_gpt":0.2919726708395912,"score_spread":0.2452449558360977,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}