{"id":"W2058767645","doi":"10.1007/s10482-014-0164-x","title":"A phylogenomic and molecular marker based proposal for the division of the genus Borrelia into two genera: the emended genus Borrelia containing only the members of the relapsing fever Borrelia, and the genus Borreliella gen. nov. containing the members of the Lyme disease Borrelia (Borrelia burgdorferi sensu lato complex)","year":2014,"lang":"en","type":"article","venue":"Antonie van Leeuwenhoek","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":240,"is_retracted":false,"has_abstract":false,"ca_institutions":"McMaster University","funders":"","keywords":"Borrelia; relapsing fever; Biology; Phylogenetic tree; Genome; Genetics; Borrelia burgdorferi; Virology; Gene; Antibody","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","sts"],"consensus_categories":["sts"],"category_scores_codex":[0.003872915,0.001158571,0.00126664,0.0001354969,0.003627043,0.0002159321,0.002815904,0.0003942901,0.0001458439],"category_scores_gemma":[0.001842693,0.0004691558,0.001208158,0.0008394379,0.005965453,0.0001685194,0.001477343,0.001407616,0.000010716],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001966488,"about_ca_system_score_gemma":0.001223224,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006179817,"about_ca_topic_score_gemma":0.001964182,"domain_scores_codex":[0.9913177,0.00372585,0.001747208,0.00119984,0.0006753214,0.001334035],"domain_scores_gemma":[0.988915,0.00477599,0.002073804,0.003404228,0.0006734118,0.0001575261],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.02354183,0.00229323,0.3839841,0.001603531,0.01665363,0.0000721352,0.05348433,0.05599282,0.3108696,0.05158337,0.0474428,0.05247859],"study_design_scores_gemma":[0.04345381,0.002128871,0.6128584,0.002370745,0.01544382,0.0007570667,0.02012549,0.1256284,0.03996665,0.006700256,0.126252,0.004314562],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9632184,0.01799537,0.000990313,0.008640389,0.002877831,0.005351846,0.0004965569,0.00008459439,0.0003447013],"genre_scores_gemma":[0.9950175,0.0004947919,0.0001092859,0.003402277,0.0001853786,0.0003201368,0.0000618946,0.000188989,0.000219731],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.270903,"threshold_uncertainty_score":0.999776,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007826097232337152,"score_gpt":0.2321702964003113,"score_spread":0.2243441991679741,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}