{"id":"W2059224185","doi":"10.1093/nar/gkm826","title":"Xenbase: a Xenopus biology and genomics resource","year":2007,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":135,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; Alberta Heritage Foundation for Medical Research; National Institutes of Health; University of Calgary","keywords":"Biology; Xenopus; UniGene; Genome; Ensembl; Genomics; Computational biology; Annotation; Database; Gene; Gene Annotation; Gene nomenclature; Genetics; Expressed sequence tag; Computer science","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001667097,0.0001349548,0.000143013,0.0001158269,0.0002762583,0.00003040696,0.0002632391,0.0001982172,0.00002931813],"category_scores_gemma":[0.0001691869,0.0001273817,0.00004425552,0.0001478403,0.0004486181,4.223923e-7,0.0005421815,0.0002175636,0.00001890657],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002769334,"about_ca_system_score_gemma":0.00006776599,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005869056,"about_ca_topic_score_gemma":0.00006129299,"domain_scores_codex":[0.9984844,0.0001105928,0.0001925766,0.0004495293,0.0001489294,0.0006139178],"domain_scores_gemma":[0.9992052,0.00007138756,0.00003121279,0.0003981581,0.0001332636,0.0001608151],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001331737,0.00003061039,0.01355028,0.0000106167,0.00004747593,0.000006191526,0.0001671031,0.000001919565,0.9647561,0.000836371,0.002001643,0.01845846],"study_design_scores_gemma":[0.0005666109,0.0006296538,0.03091349,0.000004891114,0.000006998104,0.00003160888,0.000505962,0.00001851376,0.1199152,0.0009316604,0.846257,0.0002183659],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9853889,0.003529272,0.0002125025,0.0003036421,0.00006195668,0.000195519,0.00002979254,0.000003888792,0.01027453],"genre_scores_gemma":[0.9962708,0.0008383006,0.001418252,0.0001951445,0.0003999887,0.00001002425,0.00002550032,0.00003063427,0.0008113431],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8448409,"threshold_uncertainty_score":0.5194477,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03217235826621935,"score_gpt":0.3371192273141309,"score_spread":0.3049468690479116,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}