{"id":"W2059243091","doi":"10.1371/journal.pone.0087734","title":"Increased Prevalence of Methanosphaera stadtmanae in Inflammatory Bowel Diseases","year":2014,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":152,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; Centre intégré de santé et de services sociaux de Chaudière-Appalaches; Institut Universitaire de Cardiologie et de Pneumologie de Québec","funders":"Fonds de Recherche du Québec - Santé; Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research; Institut de Recherche Robert-Sauvé en Santé et en Sécurité du Travail","keywords":"Peripheral blood mononuclear cell; Immunology; Inflammatory bowel disease; Biology; Feces; Gut flora; Immunogenicity; Immune system; Microbiology; Immunity; Medicine; Internal medicine; In vitro; Disease","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004727194,0.00042425,0.0004072787,0.00169159,0.0003840806,0.0005688646,0.0002175243,0.000397595,0.00220791],"category_scores_gemma":[0.001068371,0.0002379472,0.0003086928,0.0009560967,0.000312795,0.0002683395,0.0005248507,0.0003571494,0.0003297683],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001772198,"about_ca_system_score_gemma":0.0001757231,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001089962,"about_ca_topic_score_gemma":0.001104298,"domain_scores_codex":[0.9995214,0.0001189166,0.00007167453,0.0001005493,0.0001066667,0.00008080871],"domain_scores_gemma":[0.999168,0.0001101286,0.000382287,0.00003998953,0.0001252166,0.0001743234],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001195446,0.00006801234,0.9523649,0.0002929939,0.0001108949,0.00077531,0.0003043808,0.00003353364,0.03633339,0.00003941023,0.000220222,0.008261514],"study_design_scores_gemma":[0.00001730226,0.000253659,0.9914749,0.00005021891,0.0001240335,0.002941437,0.000440093,0.0000929274,0.002786837,0.00006827296,0.001744684,0.000005582331],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9923074,0.006219162,0.0002936088,0.00008906359,0.0000316327,0.00001678756,0.0004534102,0.00001596219,0.0005730021],"genre_scores_gemma":[0.9976038,0.001157631,0.0005853593,0.00005101217,0.00004344919,0.0000120662,0.0003391948,0.000003674747,0.0002038293],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00220791,"threshold_uncertainty_score":0.007386208,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01273386662531536,"score_gpt":0.2272863062453086,"score_spread":0.2145524396199932,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}