{"id":"W2059841448","doi":"10.1128/jcm.06185-11","title":"Sequence Typing Confirms that a Predominant Listeria monocytogenes Clone Caused Human Listeriosis Cases and Outbreaks in Canada from 1988 to 2010","year":2012,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":115,"is_retracted":false,"has_abstract":true,"ca_institutions":"Health Canada; University of Manitoba; Public Health Agency of Canada","funders":"Canadian Food Inspection Agency; British Columbia Centre for Disease Control; Pennsylvania State University; U.S. Department of Agriculture","keywords":"Multilocus sequence typing; Listeria monocytogenes; Biology; Typing; Serotype; Pulsed-field gel electrophoresis; Outbreak; Virulence; Listeria; clone (Java method); Microbiology; Virology; Population; Genotype; Locus (genetics); Genetics; Bacteria; Gene; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008494464,0.0002555734,0.0007949062,0.00006394842,0.00005959538,0.00002294495,0.0003731605,0.0003339406,0.00004230627],"category_scores_gemma":[0.0005929198,0.0002148804,0.0001433396,0.00005714691,0.0001809633,0.00001610944,0.0004590761,0.0002380096,0.000002792584],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000113562,"about_ca_system_score_gemma":0.0005344498,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.08717513,"about_ca_topic_score_gemma":0.3349931,"domain_scores_codex":[0.9973568,0.0004066131,0.001371312,0.0003587655,0.00005720794,0.0004492671],"domain_scores_gemma":[0.9981738,0.000299328,0.0007080358,0.000375793,0.0001194676,0.0003235469],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007015562,0.00006100434,0.2763543,0.00001125672,0.0001078763,0.00004908133,0.00006739316,0.000004143045,0.7203262,0.000003607483,0.0008124072,0.001501123],"study_design_scores_gemma":[0.004223463,0.001902288,0.4738337,0.0002334481,0.0001784945,0.002354845,0.0004381129,0.000003732806,0.4118621,0.0000250034,0.104127,0.0008176612],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9948425,0.001838151,0.00005176859,0.0004556107,0.002404228,0.0001859938,0.0001967569,0.000002627046,0.00002238722],"genre_scores_gemma":[0.9963303,0.0003427932,0.0009314062,0.00148854,0.0007622328,0.00000633256,0.00004987392,0.00002663962,0.00006192319],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3084641,"threshold_uncertainty_score":0.9189035,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.2127229396321511,"score_gpt":0.4016702116033532,"score_spread":0.1889472719712021,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}