{"id":"W2059841448","doi":"10.1128/jcm.06185-11","title":"Sequence Typing Confirms that a Predominant Listeria monocytogenes Clone Caused Human Listeriosis Cases and Outbreaks in Canada from 1988 to 2010","year":2012,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":115,"is_retracted":false,"has_abstract":true,"ca_institutions":"Health Canada; University of Manitoba; Public Health Agency of Canada","funders":"Canadian Food Inspection Agency; British Columbia Centre for Disease Control; Pennsylvania State University; U.S. Department of Agriculture","keywords":"Multilocus sequence typing; Listeria monocytogenes; Biology; Typing; Serotype; Pulsed-field gel electrophoresis; Outbreak; Virulence; Listeria; clone (Java method); Microbiology; Virology; Population; Genotype; Locus (genetics); Genetics; Bacteria; Gene; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001868722,0.0001907812,0.00017026,0.001132929,0.0009613247,0.0004227635,0.0002924237,0.0002052631,0.001376963],"category_scores_gemma":[0.0007480208,0.0001405178,0.0001484616,0.001582195,0.0002705829,0.0001024645,0.0002178254,0.0002872394,0.0002558534],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.005474602,"about_ca_system_score_gemma":0.007740975,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9587212,"about_ca_topic_score_gemma":0.9707831,"domain_scores_codex":[0.9996959,0.00001067156,0.00001455057,0.00004562219,0.0001488792,0.00008446025],"domain_scores_gemma":[0.9989921,0.00002657836,0.00008772486,0.00002456489,0.0007454174,0.0001235606],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003802942,0.00004325418,0.9157,0.0001111171,0.00003616422,0.00085001,0.001825265,0.0004484312,0.02975477,0.0003480504,0.005279841,0.0452227],"study_design_scores_gemma":[0.000004841219,0.00003861323,0.9921567,0.00003364227,0.00001393391,0.0004721754,0.0007371355,0.0001957537,0.001796927,0.00002135991,0.004523804,0.000005164733],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9860254,0.0007645984,0.0005608128,0.0003482968,0.00002174867,0.00004092688,0.005087943,0.00003652969,0.00711377],"genre_scores_gemma":[0.9916108,0.000782976,0.0009197881,0.0001650615,0.000009049323,0.000009241862,0.002998929,0.000008509212,0.003495531],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04127884,"threshold_uncertainty_score":0.08304381,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.2127229396321511,"score_gpt":0.4016702116033532,"score_spread":0.1889472719712021,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}