{"id":"W2059901544","doi":"10.1371/journal.pone.0116402","title":"Effects of N-Glycosylation Site Removal in Archaellins on the Assembly and Function of Archaella in Methanococcus maripaludis","year":2015,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Glycosylation and Glycoproteins Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph; Queen's University","funders":"Natural Sciences and Engineering Research Council of Canada; Biotechnology and Biological Sciences Research Council; Directorate for Biological Sciences; China Scholarship Council; Leverhulme Trust","keywords":"Glycosylation; N-linked glycosylation; Mutant; Asparagine; Methanococcus; Wild type; Biochemistry; Chemistry; Mutation; Biology; Molecular biology; Glycoprotein; Gene; Escherichia coli; Amino acid; Glycan","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001758423,0.0004147012,0.000251273,0.0001310988,0.0001712734,0.0003717673,0.0003463165,0.000284506,0.0004739889],"category_scores_gemma":[0.0001989973,0.0002300145,0.0002858227,0.0001591557,0.0003037607,0.0001553643,0.0004150462,0.0004557399,0.0001913972],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002803812,"about_ca_system_score_gemma":0.0003275328,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00246394,"about_ca_topic_score_gemma":0.002671124,"domain_scores_codex":[0.999785,0.00005134352,0.0000404448,0.00002985949,0.00005452375,0.0000389883],"domain_scores_gemma":[0.9998065,0.00003140289,0.00005525511,0.00003519934,0.00002336059,0.00004830636],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002948655,0.00004887434,0.0004580524,0.00002530721,0.000007292705,0.00008047496,0.00002913595,0.00007253553,0.9984649,0.00002959737,0.00001202578,0.0004769821],"study_design_scores_gemma":[0.00002144643,0.0003263836,0.00912314,0.000008507825,0.00002548822,0.0002474983,0.0001124491,0.001089917,0.987922,0.00003001293,0.001082033,0.00001113604],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9994499,0.0001260236,0.0001636445,0.00002497809,0.000006475516,0.000004756898,0.00006616305,0.00000648376,0.0001515202],"genre_scores_gemma":[0.9982812,0.0001142149,0.0006985028,0.00003239115,0.000003017277,0.000009267131,0.0002466499,0.00001587214,0.0005989778],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00246394,"threshold_uncertainty_score":0.004899204,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04327554169350174,"score_gpt":0.2574893344699592,"score_spread":0.2142137927764575,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}