{"id":"W2060322845","doi":"10.1371/journal.pgen.0010001","title":"A Human-Curated Annotation of the Candida albicansGenome","year":2005,"lang":"en","type":"article","venue":"PLoS Genetics","topic":"Antifungal resistance and susceptibility","field":"Medicine","cited_by":338,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; Royal Victoria Hospital; National Research Council Canada; Université de Montréal; Montreal Clinical Research Institute; Biotechnology Research Institute","funders":"National Institute of Dental and Craniofacial Research; National Research Council Canada; Canadian Institutes of Health Research; National Institutes of Health; Incyte; North Carolina State University; Massachusetts Institute of Technology; National Institute of Allergy and Infectious Diseases; Broad Institute; Wellcome Trust; University of California, San Francisco; Burroughs Wellcome Fund","keywords":"Biology; Candida albicans; Genome; Gene; Genetics; Gene prediction; Genome project; Computational biology; Comparative genomics; Open reading frame; Whole genome sequencing; Fungal protein; Genomics; Peptide sequence","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005459923,0.00006323891,0.000127631,0.0000197673,0.0000534038,0.000003823657,0.00007063635,0.00004351544,0.0001156371],"category_scores_gemma":[0.00004212243,0.0000431357,0.00005226968,0.0001389368,0.00009426829,0.00001428876,0.00001759211,0.00008010126,0.00001340445],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004156344,"about_ca_system_score_gemma":0.00008099596,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000100379,"about_ca_topic_score_gemma":0.0002434065,"domain_scores_codex":[0.9993578,0.00002340392,0.0001905555,0.0001101041,0.0002064979,0.000111617],"domain_scores_gemma":[0.9994613,0.00001256843,0.00006323537,0.0002866695,0.0001334207,0.00004278398],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004293629,0.0002329141,0.2255336,0.00008789335,0.00005072258,0.000001319678,0.0006248051,0.00006915233,0.7715991,0.0001722855,0.0004876979,0.001097621],"study_design_scores_gemma":[0.0006421578,0.0001681655,0.5981681,0.00006494701,0.0001327972,0.00000225546,0.000157091,0.001369149,0.3969836,0.0001491526,0.002071038,0.0000915247],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963987,0.0003987024,0.00001862438,0.0005482098,0.00002167825,0.0002147706,0.00001052891,0.00001265903,0.002376166],"genre_scores_gemma":[0.9982522,0.00002458269,0.0002145205,0.0002413379,0.00008461349,0.000003687493,0.000006376231,0.000008769592,0.001163949],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3746154,"threshold_uncertainty_score":0.1759023,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0295656820620381,"score_gpt":0.2921254702562381,"score_spread":0.2625597881942001,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}