{"id":"W2060480089","doi":"10.1186/1471-2164-10-180","title":"Bos taurus genome assembly","year":2009,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Genome Rearrangement Algorithms","field":"Biochemistry, Genetics and Molecular Biology","cited_by":162,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Norges Forskningsråd; Commonwealth Scientific and Industrial Research Organisation; AgResearch; Genome British Columbia; Robert J. Kleberg, Jr. and Helen C. Kleberg Foundation; National Human Genome Research Institute; Agricultural Research Service; Genome Canada; U.S. Department of Agriculture; Cooperative State Research, Education, and Extension Service; National Institutes of Health; U.S. Department of Health and Human Services","keywords":"Sequence assembly; Contig; Genome; Hybrid genome assembly; Biology; Reference genome; Computational biology; Genetics; Whole genome sequencing; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001551769,0.0001895911,0.000148939,0.00005047889,0.00007575698,0.00004322021,0.0003083919,0.0001437377,0.00003199952],"category_scores_gemma":[0.00002452268,0.0002024839,0.0001188817,0.00007691946,0.00002693628,0.000002909928,0.00008183186,0.00007403087,0.0001734321],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004408934,"about_ca_system_score_gemma":0.0001038415,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000004728305,"about_ca_topic_score_gemma":0.00001807851,"domain_scores_codex":[0.9988952,0.00003134534,0.0002093931,0.0003837197,0.000117404,0.000362904],"domain_scores_gemma":[0.9992488,0.000004211023,0.00007466765,0.0005007677,0.00005342107,0.0001181188],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00002938261,0.00005893465,0.0004864053,0.000006550208,0.00002489032,0.000003093147,0.00004221034,0.0003003417,0.9951603,0.00007274264,0.000774567,0.003040588],"study_design_scores_gemma":[0.002108162,0.001161598,0.06111048,0.000006930412,0.00007884866,0.00006997824,0.0002103649,0.0004193697,0.3372943,0.0006580804,0.5956951,0.001186799],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9840627,0.001367563,0.00739494,0.0001335849,0.0001611601,0.0002916678,0.0000197762,0.0000312456,0.006537327],"genre_scores_gemma":[0.9790227,0.0002752006,0.01655815,0.0005837864,0.0006776619,0.00001246874,0.0001947632,0.00003662088,0.002638588],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.657866,"threshold_uncertainty_score":0.8257056,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01463854184932328,"score_gpt":0.2395022810947722,"score_spread":0.2248637392454489,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}