{"id":"W2061057873","doi":"10.1371/journal.pone.0035117","title":"Revised Selection Criteria for Candidate Restriction Enzymes in Genome Walking","year":2012,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Animal Genetics and Reproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada","keywords":"Restriction enzyme; Adapter (computing); In silico; Biology; Isoschizomer; Genetics; Computational biology; Restriction site; Genome; Recognition sequence; DNA; genomic DNA; DNA methylation; Gene; Computer science","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005737111,0.002356554,0.002787508,0.003215327,0.0007381609,0.002263354,0.00224338,0.001236673,0.002462684],"category_scores_gemma":[0.01248277,0.001236961,0.001315893,0.00250787,0.0006290996,0.001493093,0.001588018,0.002127122,0.00355479],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004883773,"about_ca_system_score_gemma":0.001108942,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000828854,"about_ca_topic_score_gemma":0.00120003,"domain_scores_codex":[0.9920075,0.002413951,0.001255619,0.001160855,0.002702408,0.0004596228],"domain_scores_gemma":[0.9931163,0.002309514,0.0006502222,0.0009228297,0.002680937,0.0003203135],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008311954,0.0002633327,0.00411185,0.001438529,0.0001411186,0.0009784212,0.0003129597,0.008369511,0.6919522,0.007315558,0.002903124,0.2813823],"study_design_scores_gemma":[0.0002197202,0.0008966965,0.005732747,0.0002579706,0.0003743951,0.003391565,0.0002204378,0.1185993,0.8079095,0.004157395,0.05794171,0.000298772],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.0359385,0.001337122,0.9575735,0.0001216956,0.0001355816,0.0007184838,0.0003438572,0.002017993,0.001813323],"genre_scores_gemma":[0.03288889,0.0006084643,0.9628072,0.00006237852,0.00002960086,0.000482734,0.001010132,0.0003622016,0.001748434],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.005737111,"threshold_uncertainty_score":0.03034109,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03753071295542153,"score_gpt":0.2664973019471851,"score_spread":0.2289665889917636,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}