{"id":"W2061284677","doi":"10.2174/1875036201004010041","title":"Differences in Promoters of Orthologous Genes","year":2010,"lang":"en","type":"article","venue":"The Open Bioinformatics Journal","topic":"Gene expression and cancer classification","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Biotechnology Research Institute","funders":"Directorate for Biological Sciences; University of Ottawa","keywords":"Gene; Biology; Zebrafish; Orthologous Gene; Genome; Genetics; Promoter; Human genome; Phylogenetic tree; Model organism; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004735663,0.00006229511,0.00008865142,0.00004000766,0.00007414578,0.00007218333,0.000616178,0.00005991463,0.0000394996],"category_scores_gemma":[0.00003938283,0.00003576672,0.0000321323,0.00007096688,0.00007911061,0.00001102654,0.0001498867,0.0001649346,0.000003049132],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000002907918,"about_ca_system_score_gemma":0.00008828202,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005252123,"about_ca_topic_score_gemma":0.0000341506,"domain_scores_codex":[0.9994385,0.00003282765,0.0002778561,0.00005159236,0.00009657181,0.0001026956],"domain_scores_gemma":[0.9994608,0.000005774152,0.0002187885,0.000224368,0.00005299368,0.00003726747],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009711672,0.00007116237,0.01974709,0.00001667298,0.00002617875,0.00000102558,0.0009818084,0.00001556483,0.9127294,0.0003007689,0.001924614,0.06408856],"study_design_scores_gemma":[0.002652854,0.000705636,0.1480401,0.000107571,0.00003357106,0.0007266598,0.005027388,0.002260814,0.7865507,0.001489664,0.05189627,0.000508752],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9944152,0.00007678603,0.000752557,0.0003702261,0.0002240281,0.0001506377,0.00000236666,0.000001198878,0.00400703],"genre_scores_gemma":[0.996257,0.0002242197,0.00310181,0.0001069165,0.00005484142,0.00000658776,0.000004376402,0.000004000414,0.0002402499],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.128293,"threshold_uncertainty_score":0.1458524,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02240162046769039,"score_gpt":0.2833074828353821,"score_spread":0.2609058623676917,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}