{"id":"W2061553335","doi":"10.1016/j.tim.2012.02.007","title":"Bacterial effector interplay: a new way to view effector function","year":2012,"lang":"en","type":"article","venue":"Trends in Microbiology","topic":"Yersinia bacterium, plague, ectoparasites research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":56,"is_retracted":false,"has_abstract":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; Michael Smith Health Research BC; University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Effector; Biology; Virulence; Function (biology); Secretion; Host (biology); Cell biology; Microbiology; Computational biology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0003901491,0.0002897041,0.000356906,0.0003077869,0.00004264968,0.0000249922,0.0003006489,0.0003646508,0.001086396],"category_scores_gemma":[0.0001172942,0.0002664723,0.0001262681,0.0003149589,0.00007139619,0.00001057165,0.0002737919,0.0002206238,0.0009814466],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008597974,"about_ca_system_score_gemma":0.00003711972,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009065306,"about_ca_topic_score_gemma":0.0003422281,"domain_scores_codex":[0.9979684,0.0003702855,0.0002960862,0.000503879,0.00005063694,0.0008107588],"domain_scores_gemma":[0.9991442,0.00005835033,0.00006285152,0.0004395029,0.00003315364,0.0002619693],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0009881497,0.0000977925,0.01539801,0.0000190972,0.00005434284,0.000002504607,0.00007945681,0.000001714886,0.9314728,0.000004497996,0.02914982,0.0227318],"study_design_scores_gemma":[0.001623476,0.001525024,0.1228094,0.00003684668,0.00002556039,0.0001183325,0.000007525708,0.000001748052,0.3690971,0.000001500913,0.5043349,0.0004184695],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966625,0.0006122885,0.0002260313,0.0001847641,0.001509887,0.0002589704,0.00009556336,0.00002484701,0.0004251769],"genre_scores_gemma":[0.9944482,0.00002419985,0.0004040891,0.0004491677,0.001154037,0.00005023972,0.001821388,0.00004199871,0.001606655],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5623757,"threshold_uncertainty_score":0.9999787,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01334365794714454,"score_gpt":0.307192643421776,"score_spread":0.2938489854746315,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}