{"id":"W2061729961","doi":"10.1093/nar/gkm455","title":"Widely variable endogenous retroviral methylation levels in human placenta","year":2007,"lang":"en","type":"article","venue":"Nucleic Acids Research","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":103,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia; Terry Fox Research Institute","funders":"BC Cancer Agency; Canadian Institutes of Health Research","keywords":"Biology; Methylation; Endogenous retrovirus; DNA methylation; Long terminal repeat; Placenta; Promoter; Retrotransposon; Genetics; Gene; Molecular biology; Transposable element; Genome; Gene expression; Fetus","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.002431352,0.00009980857,0.0001326996,0.00006196651,0.0004643704,0.00007902997,0.0003314125,0.0001452942,0.001950131],"category_scores_gemma":[0.0001837972,0.00004652733,0.0000425137,0.001139189,0.00008503388,0.0001195029,0.0001495986,0.0003649661,0.0001198722],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000148618,"about_ca_system_score_gemma":0.00002515735,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001761706,"about_ca_topic_score_gemma":0.002104491,"domain_scores_codex":[0.9979858,0.0001969001,0.0002788738,0.0003251683,0.0005819992,0.0006311936],"domain_scores_gemma":[0.9992248,0.0003854859,0.00002658776,0.00009230613,0.0001416938,0.0001291443],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0000224349,0.0001083162,0.02640568,0.000003179041,0.000004909206,0.000009937869,0.0001912155,0.000009658856,0.9551439,0.003738135,0.0001197405,0.01424293],"study_design_scores_gemma":[0.0005144793,0.0006630676,0.9064994,0.00002481751,0.000004485243,0.00001634305,0.0007484698,0.0001830124,0.05698391,0.0120351,0.0220795,0.0002473751],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9724673,0.00006309671,0.00002760904,0.0004790724,0.00005852833,0.0002764397,0.00002582108,0.00003811489,0.02656403],"genre_scores_gemma":[0.9983118,0.000006822065,0.0004385147,0.00005533242,0.0002757282,0.00001029607,0.00004674622,0.000001704737,0.000853051],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8981599,"threshold_uncertainty_score":0.9989622,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.129640460043643,"score_gpt":0.3391824188904717,"score_spread":0.2095419588468288,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}