{"id":"W2061928005","doi":"10.1016/j.ygeno.2008.09.008","title":"Transcriptome studies on Streptococcus pneumoniae, illustration of early response genes to THP-1 human macrophages","year":2008,"lang":"en","type":"article","venue":"Genomics","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Alberta; University of Saskatchewan","funders":"","keywords":"Biology; Locus (genetics); Gene; Streptococcus pneumoniae; Mutant; Transcriptome; Microbiology; Genetics; Phenotype; THP1 cell line; Mutagenesis; Gene expression; Molecular biology; Bacteria; Cell culture","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001833813,0.0002014625,0.0003224676,0.0003293272,0.0003500172,0.0002842669,0.00008575089,0.0002205929,0.001111139],"category_scores_gemma":[0.0001713209,0.0001304711,0.0003332743,0.0004351626,0.0001895303,0.0001394054,0.0002053487,0.000377368,0.0004047667],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001658448,"about_ca_system_score_gemma":0.000211826,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007756707,"about_ca_topic_score_gemma":0.001211832,"domain_scores_codex":[0.9998957,0.00002136996,0.000006725781,0.00002526767,0.00002105286,0.00002984309],"domain_scores_gemma":[0.9999249,0.00002340742,0.000009820907,0.000009671967,0.00002034105,0.00001191807],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001966142,0.0000074876,0.0007108521,0.00004650285,0.000003596793,0.000047205,0.00006826311,0.00003671059,0.997833,0.000041138,0.00005574348,0.000952859],"study_design_scores_gemma":[0.00002311999,0.0006489949,0.2023631,0.0000380163,0.00009741522,0.0009509769,0.0009736572,0.001061513,0.7863336,0.0003384885,0.007154168,0.00001691708],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9887167,0.002501843,0.003383275,0.0002370091,0.00004237139,0.00003299821,0.003149263,0.00003349194,0.00190313],"genre_scores_gemma":[0.980591,0.003294648,0.006153991,0.0002962783,0.00006538313,0.00009424172,0.004337528,0.00003277208,0.005134218],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001111139,"threshold_uncertainty_score":0.003717184,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07837863396227376,"score_gpt":0.3362404027005257,"score_spread":0.257861768738252,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}