{"id":"W2061944620","doi":"10.1186/1471-2164-9-412","title":"The protein-phosphatome of the human malaria parasite Plasmodium falciparum","year":2008,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Protein Tyrosine Phosphatases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":76,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institutes of Health; National Institute of Technology Delhi; Institut National de la Santé et de la Recherche Médicale; National Institute of Allergy and Infectious Diseases; European Commission; Duke-NUS Medical School; Wellcome Trust; McGill University; Burroughs Wellcome Fund","keywords":"Biology; Plasmodium falciparum; Phylogenetic tree; Genome; Phylum; Genetics; Context (archaeology); Malaria; Phylogenetics; Apicomplexa; Clade; Subfamily; Plasmodium (life cycle); Gene; Evolutionary biology; Computational biology; Parasite hosting; Immunology","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000181185,0.000171439,0.0001389526,0.00001252157,0.0004637476,0.00002016573,0.0007004518,0.0001136578,0.000006653358],"category_scores_gemma":[0.00009608355,0.0001128967,0.0001474601,0.00008406815,0.0003234896,0.000003330709,0.0003586691,0.0001049881,0.00001469195],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002260182,"about_ca_system_score_gemma":0.0001937058,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006612534,"about_ca_topic_score_gemma":0.0001164686,"domain_scores_codex":[0.9989184,0.00007045685,0.0002873779,0.00026914,0.0001529687,0.0003016614],"domain_scores_gemma":[0.9987643,0.00001571717,0.0002044955,0.0008923586,0.00006842709,0.00005471259],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001367187,0.00006542498,0.02613663,0.00002777402,0.00006173316,0.000002316961,0.00005608317,0.0001580839,0.9601845,0.01029797,0.002725021,0.00014775],"study_design_scores_gemma":[0.0003800619,0.00008188126,0.03080152,0.000007849249,0.00001265937,0.00001997868,0.000016647,0.00001567768,0.9353411,0.0003198939,0.03285774,0.0001450187],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9929807,0.005383045,0.0002873637,0.0001557393,0.0001520352,0.000687644,0.00007997801,0.00001074347,0.0002627813],"genre_scores_gemma":[0.9972278,0.0001147331,0.0009520442,0.00009007934,0.0001248364,0.00008891687,0.00004362462,0.0000311086,0.001326793],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03013272,"threshold_uncertainty_score":0.4603792,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01764063132623202,"score_gpt":0.2431602439362651,"score_spread":0.2255196126100331,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}