{"id":"W2061962251","doi":"10.4161/epi.27648","title":"Improved reporting of DNA methylation data derived from studies of the human placenta","year":2014,"lang":"en","type":"article","venue":"Epigenetics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"ca_institutions":"Child and Family Research Institute; University of British Columbia","funders":"","keywords":"Epigenetics; DNA methylation; Biology; Epigenomics; Epigenesis; Confounding; Bioinformatics; Placenta; Computational biology; Genetics; Pregnancy; Pathology; Medicine; Fetus; Gene expression; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008503365,0.000126579,0.0002582353,0.00002275289,0.00008659129,0.000007063257,0.000415182,0.0001120946,0.000004961361],"category_scores_gemma":[0.001925486,0.0000995221,0.00007675763,0.00008029101,0.0001385447,0.000003060224,0.0004996199,0.00006099551,3.151849e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007270214,"about_ca_system_score_gemma":0.00004137867,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007172607,"about_ca_topic_score_gemma":0.0001797732,"domain_scores_codex":[0.9982539,0.0001609142,0.0009596014,0.0003247879,0.0001675754,0.0001332593],"domain_scores_gemma":[0.9969456,0.00006598142,0.001505572,0.001239771,0.0002118294,0.00003126887],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000007905537,0.00002660056,0.02697014,0.00002246295,0.0000863473,5.180688e-8,0.0001207222,0.0001875819,0.9687949,0.00001818138,0.00002776121,0.003737337],"study_design_scores_gemma":[0.0002536508,0.0001044363,0.06889504,0.00002202565,0.00006284486,1.238139e-7,0.0001031174,0.0006541166,0.928125,0.0006571939,0.001022218,0.0001002265],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9902032,0.003151217,0.005947059,0.00005395798,0.0002259729,0.0001695993,0.00005340932,0.000004419638,0.0001911497],"genre_scores_gemma":[0.9949383,0.0003801591,0.004138772,0.00002099443,0.0001745203,0.000003337655,0.0002589952,0.00001899326,0.00006598952],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04192491,"threshold_uncertainty_score":0.4058394,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07615517289197096,"score_gpt":0.3480616673512233,"score_spread":0.2719064944592523,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}